Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00727 and SMc00726 are separated by 37 nucleotides SMc00726 and SMc00725 are separated by 25 nucleotides SMc00725 and SMc00724 are separated by 195 nucleotides SMc00724 and SMc00723 are separated by 14 nucleotides
SMc00727: SMc00727 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,852,633 to 2,853,505
SMc00727
SMc00726: SMc00726 - thiol:disulfide interchange redox-active center transmembrane protein, at 2,853,543 to 2,854,217
SMc00726
SMc00725: SMc00725 - argininosuccinate lyase, at 2,854,243 to 2,855,646
SMc00725
SMc00724: SMc00724 - hypothetical protein, at 2,855,842 to 2,856,042
SMc00724
SMc00723: SMc00723 - diaminopimelate DAP decarboxylase, at 2,856,057 to 2,857,325
SMc00723
Position (kb)
2854
2855
2856 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2853.243 kb on - strand, within SMc00727 at 2853.285 kb on - strand, within SMc00727 at 2853.395 kb on + strand, within SMc00727 at 2853.396 kb on - strand, within SMc00727 at 2853.396 kb on - strand, within SMc00727 at 2853.422 kb on + strand at 2853.423 kb on - strand at 2853.467 kb on + strand at 2853.467 kb on + strand at 2853.468 kb on - strand at 2853.468 kb on - strand at 2853.468 kb on - strand at 2854.129 kb on + strand, within SMc00726 at 2854.331 kb on + strand at 2854.331 kb on + strand at 2854.331 kb on + strand at 2854.332 kb on - strand at 2854.332 kb on - strand at 2854.332 kb on - strand at 2854.388 kb on + strand, within SMc00725 at 2854.786 kb on + strand, within SMc00725 at 2854.786 kb on + strand, within SMc00725 at 2854.786 kb on + strand, within SMc00725 at 2854.787 kb on - strand, within SMc00725 at 2854.787 kb on - strand, within SMc00725 at 2854.787 kb on - strand, within SMc00725 at 2855.222 kb on - strand, within SMc00725 at 2855.539 kb on + strand at 2855.539 kb on + strand at 2855.644 kb on + strand at 2855.645 kb on - strand at 2855.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,853,243 - SMc00727 0.70 +0.5 2,853,285 - SMc00727 0.75 +0.2 2,853,395 + SMc00727 0.87 +0.3 2,853,396 - SMc00727 0.87 +1.1 2,853,396 - SMc00727 0.87 -0.4 2,853,422 + +0.4 2,853,423 - +1.6 2,853,467 + -0.4 2,853,467 + -0.4 2,853,468 - +0.5 2,853,468 - -0.0 2,853,468 - +0.1 2,854,129 + SMc00726 0.87 -0.3 2,854,331 + -0.3 2,854,331 + +1.2 2,854,331 + +0.4 2,854,332 - +0.5 2,854,332 - +3.4 2,854,332 - -1.2 2,854,388 + SMc00725 0.10 +0.5 2,854,786 + SMc00725 0.39 -0.4 2,854,786 + SMc00725 0.39 -0.1 2,854,786 + SMc00725 0.39 +0.3 2,854,787 - SMc00725 0.39 -0.4 2,854,787 - SMc00725 0.39 +0.5 2,854,787 - SMc00725 0.39 +0.0 2,855,222 - SMc00725 0.70 +0.6 2,855,539 + +0.2 2,855,539 + -0.0 2,855,644 + -0.2 2,855,645 - -0.5 2,855,667 + +0.3
Or see this region's nucleotide sequence