Strain Fitness in Sinorhizobium meliloti 1021 around SMc00725

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00727 and SMc00726 are separated by 37 nucleotidesSMc00726 and SMc00725 are separated by 25 nucleotidesSMc00725 and SMc00724 are separated by 195 nucleotidesSMc00724 and SMc00723 are separated by 14 nucleotides SMc00727: SMc00727 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,852,633 to 2,853,505 SMc00727 SMc00726: SMc00726 - thiol:disulfide interchange redox-active center transmembrane protein, at 2,853,543 to 2,854,217 SMc00726 SMc00725: SMc00725 - argininosuccinate lyase, at 2,854,243 to 2,855,646 SMc00725 SMc00724: SMc00724 - hypothetical protein, at 2,855,842 to 2,856,042 SMc00724 SMc00723: SMc00723 - diaminopimelate DAP decarboxylase, at 2,856,057 to 2,857,325 SMc00723 Position (kb) 2854 2855 2856Strain fitness (log2 ratio) -1 0 1 2 3at 2853.243 kb on - strand, within SMc00727at 2853.285 kb on - strand, within SMc00727at 2853.395 kb on + strand, within SMc00727at 2853.396 kb on - strand, within SMc00727at 2853.396 kb on - strand, within SMc00727at 2853.422 kb on + strandat 2853.423 kb on - strandat 2853.467 kb on + strandat 2853.467 kb on + strandat 2853.468 kb on - strandat 2853.468 kb on - strandat 2853.468 kb on - strandat 2854.129 kb on + strand, within SMc00726at 2854.331 kb on + strandat 2854.331 kb on + strandat 2854.331 kb on + strandat 2854.332 kb on - strandat 2854.332 kb on - strandat 2854.332 kb on - strandat 2854.388 kb on + strand, within SMc00725at 2854.786 kb on + strand, within SMc00725at 2854.786 kb on + strand, within SMc00725at 2854.786 kb on + strand, within SMc00725at 2854.787 kb on - strand, within SMc00725at 2854.787 kb on - strand, within SMc00725at 2854.787 kb on - strand, within SMc00725at 2855.222 kb on - strand, within SMc00725at 2855.539 kb on + strandat 2855.539 kb on + strandat 2855.644 kb on + strandat 2855.645 kb on - strandat 2855.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,853,243 - SMc00727 0.70 +0.5
2,853,285 - SMc00727 0.75 +0.2
2,853,395 + SMc00727 0.87 +0.3
2,853,396 - SMc00727 0.87 +1.1
2,853,396 - SMc00727 0.87 -0.4
2,853,422 + +0.4
2,853,423 - +1.6
2,853,467 + -0.4
2,853,467 + -0.4
2,853,468 - +0.5
2,853,468 - -0.0
2,853,468 - +0.1
2,854,129 + SMc00726 0.87 -0.3
2,854,331 + -0.3
2,854,331 + +1.2
2,854,331 + +0.4
2,854,332 - +0.5
2,854,332 - +3.4
2,854,332 - -1.2
2,854,388 + SMc00725 0.10 +0.5
2,854,786 + SMc00725 0.39 -0.4
2,854,786 + SMc00725 0.39 -0.1
2,854,786 + SMc00725 0.39 +0.3
2,854,787 - SMc00725 0.39 -0.4
2,854,787 - SMc00725 0.39 +0.5
2,854,787 - SMc00725 0.39 +0.0
2,855,222 - SMc00725 0.70 +0.6
2,855,539 + +0.2
2,855,539 + -0.0
2,855,644 + -0.2
2,855,645 - -0.5
2,855,667 + +0.3

Or see this region's nucleotide sequence