Strain Fitness in Sinorhizobium meliloti 1021 around SMc00269

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00267 and SMc00268 are separated by 48 nucleotidesSMc00268 and SMc00269 are separated by 74 nucleotidesSMc00269 and SMc00270 are separated by 12 nucleotides SMc00267: SMc00267 - hypothetical protein, at 1,836,573 to 1,837,397 SMc00267 SMc00268: SMc00268 - oxidoreductase, at 1,837,446 to 1,838,204 SMc00268 SMc00269: SMc00269 - transketolase, at 1,838,279 to 1,839,325 SMc00269 SMc00270: SMc00270 - transketolase subunit alpha, at 1,839,338 to 1,840,192 SMc00270 Position (kb) 1838 1839 1840Strain fitness (log2 ratio) -3 -2 -1 0 1at 1837.357 kb on - strandat 1837.375 kb on + strandat 1837.376 kb on - strandat 1837.496 kb on - strandat 1837.496 kb on - strandat 1837.496 kb on - strandat 1837.496 kb on - strandat 1837.749 kb on + strand, within SMc00268at 1837.750 kb on - strand, within SMc00268at 1837.751 kb on + strand, within SMc00268at 1837.752 kb on - strand, within SMc00268at 1837.843 kb on + strand, within SMc00268at 1837.843 kb on + strand, within SMc00268at 1837.844 kb on - strand, within SMc00268at 1837.882 kb on + strand, within SMc00268at 1837.883 kb on - strand, within SMc00268at 1837.883 kb on - strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.016 kb on - strand, within SMc00268at 1838.016 kb on - strand, within SMc00268at 1838.190 kb on + strandat 1838.259 kb on + strandat 1838.570 kb on - strand, within SMc00269at 1838.688 kb on + strand, within SMc00269at 1838.689 kb on - strand, within SMc00269at 1838.743 kb on + strand, within SMc00269at 1838.744 kb on - strand, within SMc00269at 1838.745 kb on + strand, within SMc00269at 1838.745 kb on + strand, within SMc00269at 1838.745 kb on + strand, within SMc00269at 1838.746 kb on - strand, within SMc00269at 1838.851 kb on + strand, within SMc00269at 1838.928 kb on + strand, within SMc00269at 1838.928 kb on + strand, within SMc00269at 1838.929 kb on - strand, within SMc00269at 1838.929 kb on - strand, within SMc00269at 1838.929 kb on - strand, within SMc00269at 1838.961 kb on + strand, within SMc00269at 1838.961 kb on + strand, within SMc00269at 1838.961 kb on + strand, within SMc00269at 1838.988 kb on + strandat 1838.988 kb on + strand, within SMc00269at 1838.988 kb on + strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.118 kb on - strand, within SMc00269at 1839.118 kb on - strand, within SMc00269at 1839.211 kb on - strand, within SMc00269at 1839.211 kb on - strand, within SMc00269at 1839.211 kb on - strand, within SMc00269at 1839.211 kb on - strand, within SMc00269at 1839.306 kb on + strandat 1839.306 kb on + strandat 1839.307 kb on - strandat 1839.307 kb on - strandat 1839.307 kb on - strandat 1839.744 kb on + strand, within SMc00270at 1839.744 kb on + strand, within SMc00270at 1839.847 kb on + strand, within SMc00270at 1839.847 kb on + strand, within SMc00270at 1839.848 kb on - strand, within SMc00270at 1839.849 kb on + strand, within SMc00270at 1839.849 kb on + strand, within SMc00270at 1839.849 kb on + strand, within SMc00270at 1839.849 kb on + strand, within SMc00270at 1839.849 kb on + strand, within SMc00270at 1839.850 kb on - strand, within SMc00270at 1839.894 kb on + strand, within SMc00270at 1839.894 kb on + strand, within SMc00270at 1839.895 kb on - strand, within SMc00270at 1839.895 kb on - strand, within SMc00270at 1839.895 kb on - strand, within SMc00270at 1839.935 kb on - strand, within SMc00270at 1839.960 kb on + strand, within SMc00270at 1839.960 kb on + strand, within SMc00270at 1839.961 kb on - strand, within SMc00270at 1839.961 kb on - strand, within SMc00270at 1839.961 kb on - strand, within SMc00270at 1840.083 kb on + strand, within SMc00270at 1840.083 kb on + strand, within SMc00270at 1840.083 kb on + strand, within SMc00270at 1840.083 kb on + strand, within SMc00270at 1840.083 kb on + strand, within SMc00270at 1840.084 kb on - strand, within SMc00270at 1840.084 kb on - strand, within SMc00270at 1840.084 kb on - strand, within SMc00270at 1840.084 kb on - strand, within SMc00270at 1840.084 kb on - strand, within SMc00270at 1840.239 kb on + strandat 1840.239 kb on + strandat 1840.240 kb on - strandat 1840.240 kb on - strandat 1840.269 kb on - strandat 1840.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,837,357 - -0.0
1,837,375 + -0.1
1,837,376 - -1.1
1,837,496 - +0.5
1,837,496 - -0.3
1,837,496 - -1.1
1,837,496 - -0.1
1,837,749 + SMc00268 0.40 -0.1
1,837,750 - SMc00268 0.40 -0.2
1,837,751 + SMc00268 0.40 -0.9
1,837,752 - SMc00268 0.40 +0.0
1,837,843 + SMc00268 0.52 +0.2
1,837,843 + SMc00268 0.52 +0.5
1,837,844 - SMc00268 0.52 +0.0
1,837,882 + SMc00268 0.57 +0.3
1,837,883 - SMc00268 0.58 -0.0
1,837,883 - SMc00268 0.58 -0.5
1,838,015 + SMc00268 0.75 +0.7
1,838,015 + SMc00268 0.75 +0.3
1,838,015 + SMc00268 0.75 -0.3
1,838,015 + SMc00268 0.75 -0.3
1,838,015 + SMc00268 0.75 +0.2
1,838,016 - SMc00268 0.75 +0.1
1,838,016 - SMc00268 0.75 -0.2
1,838,190 + +0.5
1,838,259 + -0.4
1,838,570 - SMc00269 0.28 +0.4
1,838,688 + SMc00269 0.39 +0.4
1,838,689 - SMc00269 0.39 +0.4
1,838,743 + SMc00269 0.44 -0.1
1,838,744 - SMc00269 0.44 -0.3
1,838,745 + SMc00269 0.45 -2.9
1,838,745 + SMc00269 0.45 -0.1
1,838,745 + SMc00269 0.45 +0.3
1,838,746 - SMc00269 0.45 +0.1
1,838,851 + SMc00269 0.55 -0.2
1,838,928 + SMc00269 0.62 -0.1
1,838,928 + SMc00269 0.62 -0.3
1,838,929 - SMc00269 0.62 -0.3
1,838,929 - SMc00269 0.62 -1.5
1,838,929 - SMc00269 0.62 -0.6
1,838,961 + SMc00269 0.65 -0.3
1,838,961 + SMc00269 0.65 -0.1
1,838,961 + SMc00269 0.65 -0.2
1,838,988 + +0.7
1,838,988 + SMc00269 0.68 +0.1
1,838,988 + SMc00269 0.68 +0.2
1,838,989 - SMc00269 0.68 -0.7
1,838,989 - SMc00269 0.68 -0.7
1,838,989 - SMc00269 0.68 -0.9
1,838,989 - SMc00269 0.68 +0.4
1,839,047 + SMc00269 0.73 +1.5
1,839,047 + SMc00269 0.73 -0.2
1,839,047 + SMc00269 0.73 -0.3
1,839,047 + SMc00269 0.73 +1.3
1,839,047 + SMc00269 0.73 -0.7
1,839,047 + SMc00269 0.73 -0.3
1,839,118 - SMc00269 0.80 +0.5
1,839,118 - SMc00269 0.80 -0.2
1,839,211 - SMc00269 0.89 -0.7
1,839,211 - SMc00269 0.89 +0.2
1,839,211 - SMc00269 0.89 +0.2
1,839,211 - SMc00269 0.89 +0.0
1,839,306 + -0.3
1,839,306 + +0.2
1,839,307 - +0.4
1,839,307 - -0.2
1,839,307 - -0.1
1,839,744 + SMc00270 0.47 -0.1
1,839,744 + SMc00270 0.47 +0.1
1,839,847 + SMc00270 0.60 -0.3
1,839,847 + SMc00270 0.60 -0.8
1,839,848 - SMc00270 0.60 -0.2
1,839,849 + SMc00270 0.60 +0.2
1,839,849 + SMc00270 0.60 -0.2
1,839,849 + SMc00270 0.60 -0.3
1,839,849 + SMc00270 0.60 +0.1
1,839,849 + SMc00270 0.60 -0.2
1,839,850 - SMc00270 0.60 +0.3
1,839,894 + SMc00270 0.65 -0.7
1,839,894 + SMc00270 0.65 -0.7
1,839,895 - SMc00270 0.65 +0.4
1,839,895 - SMc00270 0.65 -0.5
1,839,895 - SMc00270 0.65 -0.1
1,839,935 - SMc00270 0.70 -0.1
1,839,960 + SMc00270 0.73 -1.8
1,839,960 + SMc00270 0.73 -0.1
1,839,961 - SMc00270 0.73 +0.2
1,839,961 - SMc00270 0.73 -0.1
1,839,961 - SMc00270 0.73 -2.2
1,840,083 + SMc00270 0.87 -0.1
1,840,083 + SMc00270 0.87 +0.1
1,840,083 + SMc00270 0.87 +0.2
1,840,083 + SMc00270 0.87 -0.2
1,840,083 + SMc00270 0.87 -0.3
1,840,084 - SMc00270 0.87 +0.1
1,840,084 - SMc00270 0.87 -0.6
1,840,084 - SMc00270 0.87 +0.3
1,840,084 - SMc00270 0.87 +0.1
1,840,084 - SMc00270 0.87 -0.7
1,840,239 + -0.3
1,840,239 + -0.2
1,840,240 - -0.5
1,840,240 - -0.8
1,840,269 - -0.2
1,840,269 - +0.1

Or see this region's nucleotide sequence