Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20754

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20753 and SM_b20754 are separated by 116 nucleotidesSM_b20754 and SM_b20755 are separated by 96 nucleotides SM_b20753: SM_b20753 - acyl-CoA dehydrogenase, at 1,542,365 to 1,543,507 _b20753 SM_b20754: SM_b20754 - hypothetical protein, at 1,543,624 to 1,545,099 _b20754 SM_b20755: SM_b20755 - propionyl-CoA carboxylase subunit beta, at 1,545,196 to 1,546,728 _b20755 Position (kb) 1543 1544 1545 1546Strain fitness (log2 ratio) -2 -1 0 1 2at 1542.723 kb on + strand, within SM_b20753at 1542.723 kb on + strand, within SM_b20753at 1542.723 kb on + strand, within SM_b20753at 1542.724 kb on - strand, within SM_b20753at 1542.724 kb on - strand, within SM_b20753at 1542.724 kb on - strand, within SM_b20753at 1542.724 kb on - strand, within SM_b20753at 1542.778 kb on + strand, within SM_b20753at 1543.012 kb on + strand, within SM_b20753at 1543.013 kb on - strand, within SM_b20753at 1543.013 kb on - strand, within SM_b20753at 1543.014 kb on + strand, within SM_b20753at 1543.014 kb on + strand, within SM_b20753at 1543.014 kb on + strand, within SM_b20753at 1543.015 kb on - strand, within SM_b20753at 1543.069 kb on - strand, within SM_b20753at 1543.143 kb on + strand, within SM_b20753at 1543.143 kb on + strand, within SM_b20753at 1543.144 kb on - strand, within SM_b20753at 1543.144 kb on - strand, within SM_b20753at 1543.315 kb on + strand, within SM_b20753at 1543.316 kb on - strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.347 kb on + strand, within SM_b20753at 1543.348 kb on - strand, within SM_b20753at 1543.507 kb on + strandat 1543.531 kb on + strandat 1543.543 kb on - strandat 1543.543 kb on - strandat 1543.549 kb on + strandat 1543.550 kb on - strandat 1543.553 kb on + strandat 1543.554 kb on - strandat 1543.554 kb on - strandat 1543.558 kb on + strandat 1543.559 kb on - strandat 1543.568 kb on - strandat 1543.568 kb on - strandat 1543.582 kb on - strandat 1543.595 kb on - strandat 1543.684 kb on - strandat 1543.797 kb on - strand, within SM_b20754at 1543.797 kb on - strand, within SM_b20754at 1543.797 kb on - strand, within SM_b20754at 1543.797 kb on - strand, within SM_b20754at 1543.815 kb on - strand, within SM_b20754at 1543.815 kb on - strand, within SM_b20754at 1544.213 kb on + strand, within SM_b20754at 1544.240 kb on + strand, within SM_b20754at 1544.240 kb on + strand, within SM_b20754at 1544.271 kb on - strand, within SM_b20754at 1544.271 kb on - strand, within SM_b20754at 1544.271 kb on - strand, within SM_b20754at 1544.402 kb on - strand, within SM_b20754at 1544.464 kb on + strand, within SM_b20754at 1544.487 kb on - strand, within SM_b20754at 1544.573 kb on + strand, within SM_b20754at 1544.573 kb on + strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.612 kb on + strand, within SM_b20754at 1544.690 kb on + strand, within SM_b20754at 1544.774 kb on + strand, within SM_b20754at 1544.774 kb on + strand, within SM_b20754at 1544.936 kb on + strand, within SM_b20754at 1544.936 kb on + strand, within SM_b20754at 1545.022 kb on - strandat 1545.023 kb on + strandat 1545.023 kb on + strandat 1545.024 kb on - strandat 1545.024 kb on - strandat 1545.143 kb on - strandat 1545.206 kb on + strandat 1545.355 kb on + strand, within SM_b20755at 1545.355 kb on + strand, within SM_b20755at 1545.355 kb on + strand, within SM_b20755at 1545.356 kb on - strand, within SM_b20755at 1545.356 kb on - strand, within SM_b20755at 1545.713 kb on - strand, within SM_b20755at 1545.713 kb on - strand, within SM_b20755at 1545.735 kb on + strand, within SM_b20755at 1545.736 kb on - strand, within SM_b20755at 1545.760 kb on + strand, within SM_b20755at 1545.760 kb on + strand, within SM_b20755at 1545.761 kb on - strand, within SM_b20755at 1546.011 kb on - strand, within SM_b20755at 1546.036 kb on + strand, within SM_b20755at 1546.037 kb on - strand, within SM_b20755

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,542,723 + SM_b20753 0.31 +0.2
1,542,723 + SM_b20753 0.31 -0.1
1,542,723 + SM_b20753 0.31 -0.0
1,542,724 - SM_b20753 0.31 -0.7
1,542,724 - SM_b20753 0.31 -1.1
1,542,724 - SM_b20753 0.31 -0.2
1,542,724 - SM_b20753 0.31 -0.6
1,542,778 + SM_b20753 0.36 -0.2
1,543,012 + SM_b20753 0.57 +0.2
1,543,013 - SM_b20753 0.57 +0.2
1,543,013 - SM_b20753 0.57 +0.0
1,543,014 + SM_b20753 0.57 +0.1
1,543,014 + SM_b20753 0.57 -0.8
1,543,014 + SM_b20753 0.57 +0.5
1,543,015 - SM_b20753 0.57 +1.8
1,543,069 - SM_b20753 0.62 -0.8
1,543,143 + SM_b20753 0.68 +0.2
1,543,143 + SM_b20753 0.68 -0.1
1,543,144 - SM_b20753 0.68 -0.6
1,543,144 - SM_b20753 0.68 +0.0
1,543,315 + SM_b20753 0.83 -0.8
1,543,316 - SM_b20753 0.83 -2.1
1,543,347 + SM_b20753 0.86 -0.7
1,543,347 + SM_b20753 0.86 -0.3
1,543,347 + SM_b20753 0.86 +0.3
1,543,347 + SM_b20753 0.86 +1.4
1,543,347 + SM_b20753 0.86 +1.0
1,543,347 + SM_b20753 0.86 +0.0
1,543,347 + SM_b20753 0.86 -0.3
1,543,348 - SM_b20753 0.86 -0.6
1,543,507 + +0.4
1,543,531 + +2.4
1,543,543 - -1.2
1,543,543 - -0.8
1,543,549 + -0.1
1,543,550 - +0.7
1,543,553 + -0.3
1,543,554 - -0.9
1,543,554 - -1.5
1,543,558 + -0.5
1,543,559 - -0.8
1,543,568 - -1.1
1,543,568 - -0.6
1,543,582 - -1.4
1,543,595 - -0.8
1,543,684 - -0.8
1,543,797 - SM_b20754 0.12 -0.3
1,543,797 - SM_b20754 0.12 -1.4
1,543,797 - SM_b20754 0.12 -0.6
1,543,797 - SM_b20754 0.12 -0.3
1,543,815 - SM_b20754 0.13 -0.2
1,543,815 - SM_b20754 0.13 +0.5
1,544,213 + SM_b20754 0.40 +0.5
1,544,240 + SM_b20754 0.42 +0.1
1,544,240 + SM_b20754 0.42 +0.2
1,544,271 - SM_b20754 0.44 +0.0
1,544,271 - SM_b20754 0.44 -0.1
1,544,271 - SM_b20754 0.44 -0.2
1,544,402 - SM_b20754 0.53 -0.3
1,544,464 + SM_b20754 0.57 +1.0
1,544,487 - SM_b20754 0.58 +0.3
1,544,573 + SM_b20754 0.64 +1.7
1,544,573 + SM_b20754 0.64 -0.3
1,544,574 - SM_b20754 0.64 -0.2
1,544,574 - SM_b20754 0.64 +0.8
1,544,574 - SM_b20754 0.64 -0.9
1,544,574 - SM_b20754 0.64 +0.2
1,544,612 + SM_b20754 0.67 +0.0
1,544,690 + SM_b20754 0.72 +0.2
1,544,774 + SM_b20754 0.78 -0.2
1,544,774 + SM_b20754 0.78 +1.0
1,544,936 + SM_b20754 0.89 -0.4
1,544,936 + SM_b20754 0.89 +1.1
1,545,022 - +0.1
1,545,023 + -0.1
1,545,023 + -1.3
1,545,024 - -0.3
1,545,024 - +0.2
1,545,143 - -0.3
1,545,206 + -1.0
1,545,355 + SM_b20755 0.10 +0.2
1,545,355 + SM_b20755 0.10 -0.4
1,545,355 + SM_b20755 0.10 +0.2
1,545,356 - SM_b20755 0.10 +0.1
1,545,356 - SM_b20755 0.10 -0.1
1,545,713 - SM_b20755 0.34 -0.0
1,545,713 - SM_b20755 0.34 +0.7
1,545,735 + SM_b20755 0.35 +0.0
1,545,736 - SM_b20755 0.35 -0.1
1,545,760 + SM_b20755 0.37 -0.1
1,545,760 + SM_b20755 0.37 -0.4
1,545,761 - SM_b20755 0.37 +0.3
1,546,011 - SM_b20755 0.53 -0.1
1,546,036 + SM_b20755 0.55 +0.2
1,546,037 - SM_b20755 0.55 -0.5

Or see this region's nucleotide sequence