Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20460

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20458 and SM_b20459 overlap by 1 nucleotidesSM_b20459 and SM_b20460 overlap by 4 nucleotidesSM_b20460 and SM_b20461 are separated by 10 nucleotidesSM_b20461 and SM_b20462 overlap by 4 nucleotides SM_b20458: SM_b20458 - dTDP-glucose 4,6-dehydratase, at 470,412 to 471,458 _b20458 SM_b20459: SM_b20459 - UDP-glucose 4-epimerase, at 471,458 to 472,444 _b20459 SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306 _b20460 SM_b20461: SM_b20461 - hypothetical protein, at 474,317 to 474,925 _b20461 SM_b20462: SM_b20462 - cellulase H protein, at 474,922 to 475,899 _b20462 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -1 0 1 2 3at 471.473 kb on - strandat 471.473 kb on - strandat 471.498 kb on - strandat 471.554 kb on + strandat 471.555 kb on - strandat 471.616 kb on + strand, within SM_b20459at 471.617 kb on - strand, within SM_b20459at 471.617 kb on - strand, within SM_b20459at 471.732 kb on - strand, within SM_b20459at 471.824 kb on + strandat 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.884 kb on + strand, within SM_b20459at 471.884 kb on + strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.926 kb on + strand, within SM_b20459at 471.927 kb on - strand, within SM_b20459at 471.965 kb on + strand, within SM_b20459at 472.123 kb on - strand, within SM_b20459at 472.130 kb on + strand, within SM_b20459at 472.131 kb on - strand, within SM_b20459at 472.131 kb on - strand, within SM_b20459at 472.132 kb on + strand, within SM_b20459at 472.133 kb on - strand, within SM_b20459at 472.133 kb on - strandat 472.133 kb on - strand, within SM_b20459at 472.239 kb on + strand, within SM_b20459at 472.239 kb on + strand, within SM_b20459at 472.270 kb on + strand, within SM_b20459at 472.627 kb on - strandat 472.627 kb on - strandat 472.627 kb on - strandat 472.672 kb on + strand, within SM_b20460at 472.673 kb on - strand, within SM_b20460at 472.871 kb on + strand, within SM_b20460at 472.871 kb on + strand, within SM_b20460at 472.872 kb on - strand, within SM_b20460at 472.872 kb on - strand, within SM_b20460at 472.927 kb on + strand, within SM_b20460at 472.927 kb on + strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.987 kb on + strand, within SM_b20460at 472.987 kb on + strand, within SM_b20460at 472.988 kb on - strand, within SM_b20460at 472.997 kb on - strand, within SM_b20460at 473.002 kb on + strand, within SM_b20460at 473.104 kb on + strand, within SM_b20460at 473.104 kb on + strand, within SM_b20460at 473.105 kb on - strand, within SM_b20460at 473.105 kb on - strand, within SM_b20460at 473.171 kb on - strand, within SM_b20460at 473.210 kb on - strand, within SM_b20460at 473.236 kb on - strand, within SM_b20460at 473.249 kb on - strand, within SM_b20460at 473.437 kb on - strand, within SM_b20460at 473.461 kb on + strand, within SM_b20460at 473.461 kb on + strand, within SM_b20460at 473.461 kb on + strand, within SM_b20460at 473.462 kb on - strand, within SM_b20460at 473.462 kb on - strand, within SM_b20460at 473.462 kb on - strand, within SM_b20460at 473.617 kb on + strand, within SM_b20460at 473.635 kb on + strand, within SM_b20460at 473.669 kb on + strand, within SM_b20460at 473.674 kb on + strand, within SM_b20460at 473.675 kb on - strand, within SM_b20460at 473.779 kb on - strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.960 kb on - strand, within SM_b20460at 473.960 kb on - strand, within SM_b20460at 474.193 kb on + strandat 474.193 kb on + strandat 474.194 kb on - strandat 474.240 kb on - strandat 474.294 kb on - strandat 474.305 kb on - strandat 474.305 kb on - strandat 474.305 kb on - strandat 474.305 kb on - strandat 474.485 kb on + strand, within SM_b20461at 474.485 kb on + strand, within SM_b20461at 474.485 kb on + strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.720 kb on - strand, within SM_b20461at 474.720 kb on - strand, within SM_b20461at 474.749 kb on + strand, within SM_b20461at 474.750 kb on - strand, within SM_b20461at 474.877 kb on + strandat 474.877 kb on + strandat 474.946 kb on - strandat 475.093 kb on + strand, within SM_b20462at 475.198 kb on + strand, within SM_b20462at 475.199 kb on - strand, within SM_b20462

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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471,473 - -0.1
471,473 - -0.1
471,498 - -0.3
471,554 + -0.3
471,555 - +0.2
471,616 + SM_b20459 0.16 -1.6
471,617 - SM_b20459 0.16 -0.9
471,617 - SM_b20459 0.16 +0.2
471,732 - SM_b20459 0.28 -1.7
471,824 + +1.8
471,824 + SM_b20459 0.37 +1.0
471,824 + SM_b20459 0.37 +0.3
471,824 + SM_b20459 0.37 +0.1
471,824 + SM_b20459 0.37 +0.1
471,824 + SM_b20459 0.37 -0.6
471,824 + SM_b20459 0.37 -0.4
471,825 - SM_b20459 0.37 +0.1
471,825 - SM_b20459 0.37 +0.2
471,825 - SM_b20459 0.37 +0.0
471,884 + SM_b20459 0.43 -0.3
471,884 + SM_b20459 0.43 +0.6
471,890 - SM_b20459 0.44 -0.2
471,890 - SM_b20459 0.44 +0.1
471,890 - SM_b20459 0.44 -0.2
471,890 - SM_b20459 0.44 +1.1
471,926 + SM_b20459 0.47 +0.3
471,927 - SM_b20459 0.48 -0.3
471,965 + SM_b20459 0.51 +0.9
472,123 - SM_b20459 0.67 -0.3
472,130 + SM_b20459 0.68 +0.0
472,131 - SM_b20459 0.68 +0.6
472,131 - SM_b20459 0.68 +0.3
472,132 + SM_b20459 0.68 +0.1
472,133 - SM_b20459 0.68 +0.1
472,133 - +3.0
472,133 - SM_b20459 0.68 -0.3
472,239 + SM_b20459 0.79 +0.0
472,239 + SM_b20459 0.79 -1.3
472,270 + SM_b20459 0.82 -0.1
472,627 - -0.5
472,627 - +0.0
472,627 - +0.2
472,672 + SM_b20460 0.12 +0.1
472,673 - SM_b20460 0.12 -1.1
472,871 + SM_b20460 0.23 -0.8
472,871 + SM_b20460 0.23 -0.3
472,872 - SM_b20460 0.23 -0.1
472,872 - SM_b20460 0.23 +0.8
472,927 + SM_b20460 0.26 +0.3
472,927 + SM_b20460 0.26 +0.3
472,928 - SM_b20460 0.26 +0.0
472,928 - SM_b20460 0.26 -1.4
472,928 - SM_b20460 0.26 +0.6
472,928 - SM_b20460 0.26 -0.6
472,987 + SM_b20460 0.29 +0.1
472,987 + SM_b20460 0.29 -0.1
472,988 - SM_b20460 0.29 +0.0
472,997 - SM_b20460 0.30 -0.4
473,002 + SM_b20460 0.30 -0.4
473,104 + SM_b20460 0.36 +0.5
473,104 + SM_b20460 0.36 +0.4
473,105 - SM_b20460 0.36 +0.1
473,105 - SM_b20460 0.36 -0.1
473,171 - SM_b20460 0.39 -0.2
473,210 - SM_b20460 0.41 -0.0
473,236 - SM_b20460 0.43 +0.3
473,249 - SM_b20460 0.43 +0.4
473,437 - SM_b20460 0.53 -0.0
473,461 + SM_b20460 0.55 -0.6
473,461 + SM_b20460 0.55 +0.3
473,461 + SM_b20460 0.55 +0.5
473,462 - SM_b20460 0.55 -0.3
473,462 - SM_b20460 0.55 +0.1
473,462 - SM_b20460 0.55 +0.1
473,617 + SM_b20460 0.63 +1.1
473,635 + SM_b20460 0.64 +0.4
473,669 + SM_b20460 0.66 +1.3
473,674 + SM_b20460 0.66 +0.2
473,675 - SM_b20460 0.66 +0.3
473,779 - SM_b20460 0.72 +0.1
473,959 + SM_b20460 0.81 +0.6
473,959 + SM_b20460 0.81 +1.0
473,959 + SM_b20460 0.81 +0.5
473,959 + SM_b20460 0.81 +0.6
473,960 - SM_b20460 0.81 +0.3
473,960 - SM_b20460 0.81 -0.5
474,193 + +0.4
474,193 + +1.8
474,194 - -0.5
474,240 - +0.3
474,294 - +0.0
474,305 - -0.4
474,305 - -0.1
474,305 - -0.7
474,305 - +0.2
474,485 + SM_b20461 0.28 +0.7
474,485 + SM_b20461 0.28 -0.0
474,485 + SM_b20461 0.28 +0.9
474,486 - SM_b20461 0.28 -0.6
474,486 - SM_b20461 0.28 -0.1
474,486 - SM_b20461 0.28 +0.3
474,486 - SM_b20461 0.28 +0.0
474,720 - SM_b20461 0.66 +0.4
474,720 - SM_b20461 0.66 +0.6
474,749 + SM_b20461 0.71 +0.8
474,750 - SM_b20461 0.71 -0.9
474,877 + +0.9
474,877 + +1.0
474,946 - +1.7
475,093 + SM_b20462 0.17 -0.4
475,198 + SM_b20462 0.28 +0.4
475,199 - SM_b20462 0.28 -0.4

Or see this region's nucleotide sequence