Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5982

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5981 and Pf6N2E2_5982 are separated by 306 nucleotidesPf6N2E2_5982 and Pf6N2E2_5983 are separated by 483 nucleotides Pf6N2E2_5981 - Transcriptional regulator, AraC family, at 6,799,079 to 6,799,969 _5981 Pf6N2E2_5982 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 6,800,276 to 6,801,940 _5982 Pf6N2E2_5983 - Electron transfer flavoprotein, beta subunit, at 6,802,424 to 6,803,236 _5983 Position (kb) 6800 6801 6802Strain fitness (log2 ratio) -2 -1 0 1 2at 6799.310 kb on + strand, within Pf6N2E2_5981at 6799.310 kb on + strand, within Pf6N2E2_5981at 6799.310 kb on + strand, within Pf6N2E2_5981at 6799.311 kb on - strand, within Pf6N2E2_5981at 6799.352 kb on + strand, within Pf6N2E2_5981at 6799.353 kb on - strand, within Pf6N2E2_5981at 6799.353 kb on - strand, within Pf6N2E2_5981at 6799.353 kb on - strand, within Pf6N2E2_5981at 6799.353 kb on - strand, within Pf6N2E2_5981at 6799.694 kb on - strand, within Pf6N2E2_5981at 6799.805 kb on + strand, within Pf6N2E2_5981at 6799.805 kb on + strand, within Pf6N2E2_5981at 6799.805 kb on + strand, within Pf6N2E2_5981at 6799.806 kb on - strand, within Pf6N2E2_5981at 6799.806 kb on - strand, within Pf6N2E2_5981at 6799.922 kb on + strandat 6799.923 kb on - strandat 6800.058 kb on - strandat 6800.058 kb on - strandat 6800.058 kb on - strandat 6800.058 kb on - strandat 6800.058 kb on - strandat 6800.058 kb on - strandat 6800.058 kb on - strandat 6800.224 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.277 kb on + strandat 6800.278 kb on - strandat 6800.278 kb on - strandat 6800.278 kb on - strandat 6800.278 kb on - strandat 6800.278 kb on - strandat 6801.954 kb on - strandat 6801.954 kb on - strandat 6802.071 kb on - strandat 6802.071 kb on - strandat 6802.073 kb on - strandat 6802.073 kb on - strandat 6802.073 kb on - strandat 6802.073 kb on - strandat 6802.073 kb on - strandat 6802.073 kb on - strandat 6802.073 kb on - strandat 6802.097 kb on + strandat 6802.098 kb on - strandat 6802.131 kb on + strandat 6802.145 kb on - strandat 6802.145 kb on - strandat 6802.151 kb on + strandat 6802.152 kb on - strandat 6802.152 kb on - strandat 6802.201 kb on + strandat 6802.311 kb on + strandat 6802.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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6,799,310 + Pf6N2E2_5981 0.26 -0.9
6,799,310 + Pf6N2E2_5981 0.26 +1.0
6,799,310 + Pf6N2E2_5981 0.26 -0.4
6,799,311 - Pf6N2E2_5981 0.26 -0.0
6,799,352 + Pf6N2E2_5981 0.31 +0.4
6,799,353 - Pf6N2E2_5981 0.31 +0.4
6,799,353 - Pf6N2E2_5981 0.31 -1.1
6,799,353 - Pf6N2E2_5981 0.31 -0.0
6,799,353 - Pf6N2E2_5981 0.31 -0.4
6,799,694 - Pf6N2E2_5981 0.69 +0.9
6,799,805 + Pf6N2E2_5981 0.81 +0.5
6,799,805 + Pf6N2E2_5981 0.81 -0.7
6,799,805 + Pf6N2E2_5981 0.81 +1.0
6,799,806 - Pf6N2E2_5981 0.82 +0.2
6,799,806 - Pf6N2E2_5981 0.82 +0.4
6,799,922 + +0.5
6,799,923 - -0.8
6,800,058 - -0.2
6,800,058 - -2.4
6,800,058 - -0.2
6,800,058 - -0.1
6,800,058 - +0.5
6,800,058 - +1.0
6,800,058 - -0.2
6,800,224 + -0.0
6,800,277 + +0.6
6,800,277 + +0.3
6,800,277 + +0.5
6,800,277 + +0.3
6,800,277 + +0.4
6,800,277 + +0.3
6,800,277 + -0.5
6,800,277 + -0.5
6,800,277 + -0.3
6,800,278 - -1.1
6,800,278 - +0.5
6,800,278 - -0.9
6,800,278 - -0.1
6,800,278 - -0.3
6,801,954 - -0.8
6,801,954 - +0.8
6,802,071 - -0.1
6,802,071 - +0.7
6,802,073 - +1.8
6,802,073 - +1.0
6,802,073 - +0.5
6,802,073 - -2.1
6,802,073 - +0.5
6,802,073 - -0.3
6,802,073 - +0.2
6,802,097 + -1.1
6,802,098 - +0.5
6,802,131 + +0.1
6,802,145 - +0.5
6,802,145 - +0.2
6,802,151 + -0.1
6,802,152 - +0.0
6,802,152 - +0.5
6,802,201 + +1.3
6,802,311 + -0.0
6,802,405 + -1.2

Or see this region's nucleotide sequence