Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1138

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1137 and Pf6N2E2_1138 overlap by 4 nucleotidesPf6N2E2_1138 and Pf6N2E2_1139 are separated by 152 nucleotides Pf6N2E2_1137 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 1,333,235 to 1,334,578 _1137 Pf6N2E2_1138 - Transcriptional regulator, AraC family, at 1,334,575 to 1,335,606 _1138 Pf6N2E2_1139 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 1,335,759 to 1,336,730 _1139 Position (kb) 1334 1335 1336Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1333.589 kb on + strand, within Pf6N2E2_1137at 1333.590 kb on - strand, within Pf6N2E2_1137at 1333.590 kb on - strand, within Pf6N2E2_1137at 1333.688 kb on - strand, within Pf6N2E2_1137at 1333.688 kb on - strand, within Pf6N2E2_1137at 1333.688 kb on - strand, within Pf6N2E2_1137at 1333.694 kb on + strand, within Pf6N2E2_1137at 1333.890 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1333.899 kb on - strand, within Pf6N2E2_1137at 1334.039 kb on + strand, within Pf6N2E2_1137at 1334.039 kb on + strand, within Pf6N2E2_1137at 1334.040 kb on - strand, within Pf6N2E2_1137at 1334.040 kb on - strand, within Pf6N2E2_1137at 1334.040 kb on - strand, within Pf6N2E2_1137at 1334.141 kb on + strand, within Pf6N2E2_1137at 1334.142 kb on - strand, within Pf6N2E2_1137at 1334.142 kb on - strand, within Pf6N2E2_1137at 1334.142 kb on - strand, within Pf6N2E2_1137at 1334.142 kb on - strand, within Pf6N2E2_1137at 1334.186 kb on + strand, within Pf6N2E2_1137at 1334.186 kb on + strand, within Pf6N2E2_1137at 1334.186 kb on + strand, within Pf6N2E2_1137at 1334.186 kb on + strand, within Pf6N2E2_1137at 1334.186 kb on + strand, within Pf6N2E2_1137at 1334.193 kb on - strand, within Pf6N2E2_1137at 1334.265 kb on + strand, within Pf6N2E2_1137at 1334.266 kb on - strand, within Pf6N2E2_1137at 1334.266 kb on - strand, within Pf6N2E2_1137at 1334.266 kb on - strand, within Pf6N2E2_1137at 1334.288 kb on + strand, within Pf6N2E2_1137at 1334.288 kb on + strand, within Pf6N2E2_1137at 1334.288 kb on + strand, within Pf6N2E2_1137at 1334.288 kb on + strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.289 kb on - strand, within Pf6N2E2_1137at 1334.448 kb on - strandat 1334.474 kb on + strandat 1334.607 kb on + strandat 1334.607 kb on + strandat 1334.607 kb on + strandat 1334.608 kb on - strandat 1334.608 kb on - strandat 1334.675 kb on + strandat 1334.676 kb on - strandat 1334.687 kb on + strand, within Pf6N2E2_1138at 1334.687 kb on + strand, within Pf6N2E2_1138at 1334.687 kb on + strand, within Pf6N2E2_1138at 1334.743 kb on + strand, within Pf6N2E2_1138at 1334.744 kb on - strand, within Pf6N2E2_1138at 1335.004 kb on + strand, within Pf6N2E2_1138at 1335.004 kb on + strand, within Pf6N2E2_1138at 1335.005 kb on - strand, within Pf6N2E2_1138at 1335.005 kb on - strand, within Pf6N2E2_1138at 1335.013 kb on + strand, within Pf6N2E2_1138at 1335.013 kb on + strand, within Pf6N2E2_1138at 1335.014 kb on - strand, within Pf6N2E2_1138at 1335.533 kb on - strandat 1335.533 kb on - strandat 1335.661 kb on + strandat 1335.674 kb on + strandat 1335.675 kb on - strandat 1335.727 kb on + strandat 1335.727 kb on + strandat 1335.727 kb on + strandat 1335.728 kb on - strandat 1335.728 kb on - strandat 1335.728 kb on - strandat 1335.728 kb on - strandat 1335.733 kb on - strandat 1335.758 kb on + strandat 1335.759 kb on - strandat 1335.865 kb on - strand, within Pf6N2E2_1139at 1335.867 kb on + strand, within Pf6N2E2_1139at 1335.867 kb on + strand, within Pf6N2E2_1139at 1335.868 kb on - strand, within Pf6N2E2_1139at 1335.868 kb on - strand, within Pf6N2E2_1139at 1336.053 kb on + strand, within Pf6N2E2_1139at 1336.054 kb on - strand, within Pf6N2E2_1139at 1336.072 kb on + strand, within Pf6N2E2_1139at 1336.072 kb on + strand, within Pf6N2E2_1139at 1336.073 kb on - strand, within Pf6N2E2_1139at 1336.174 kb on - strand, within Pf6N2E2_1139at 1336.266 kb on + strand, within Pf6N2E2_1139at 1336.305 kb on + strand, within Pf6N2E2_1139at 1336.305 kb on + strand, within Pf6N2E2_1139at 1336.306 kb on - strand, within Pf6N2E2_1139at 1336.306 kb on - strand, within Pf6N2E2_1139at 1336.416 kb on + strand, within Pf6N2E2_1139at 1336.417 kb on - strand, within Pf6N2E2_1139at 1336.417 kb on - strand, within Pf6N2E2_1139at 1336.417 kb on - strand, within Pf6N2E2_1139at 1336.417 kb on - strand, within Pf6N2E2_1139at 1336.417 kb on - strand, within Pf6N2E2_1139at 1336.418 kb on + strand, within Pf6N2E2_1139at 1336.497 kb on + strand, within Pf6N2E2_1139at 1336.498 kb on - strand, within Pf6N2E2_1139at 1336.498 kb on - strand, within Pf6N2E2_1139at 1336.498 kb on - strand, within Pf6N2E2_1139at 1336.498 kb on - strand, within Pf6N2E2_1139

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,333,589 + Pf6N2E2_1137 0.26 +2.5
1,333,590 - Pf6N2E2_1137 0.26 -1.1
1,333,590 - Pf6N2E2_1137 0.26 -2.1
1,333,688 - Pf6N2E2_1137 0.34 -1.0
1,333,688 - Pf6N2E2_1137 0.34 -0.8
1,333,688 - Pf6N2E2_1137 0.34 -1.8
1,333,694 + Pf6N2E2_1137 0.34 +0.9
1,333,890 - Pf6N2E2_1137 0.49 -0.9
1,333,899 - Pf6N2E2_1137 0.49 -1.4
1,333,899 - Pf6N2E2_1137 0.49 -0.9
1,333,899 - Pf6N2E2_1137 0.49 -0.9
1,333,899 - Pf6N2E2_1137 0.49 +0.1
1,334,039 + Pf6N2E2_1137 0.60 +1.8
1,334,039 + Pf6N2E2_1137 0.60 -0.4
1,334,040 - Pf6N2E2_1137 0.60 -2.6
1,334,040 - Pf6N2E2_1137 0.60 +0.6
1,334,040 - Pf6N2E2_1137 0.60 -1.6
1,334,141 + Pf6N2E2_1137 0.67 +0.6
1,334,142 - Pf6N2E2_1137 0.67 +0.4
1,334,142 - Pf6N2E2_1137 0.67 -0.9
1,334,142 - Pf6N2E2_1137 0.67 -2.8
1,334,142 - Pf6N2E2_1137 0.67 -0.6
1,334,186 + Pf6N2E2_1137 0.71 +0.5
1,334,186 + Pf6N2E2_1137 0.71 +0.6
1,334,186 + Pf6N2E2_1137 0.71 +0.6
1,334,186 + Pf6N2E2_1137 0.71 +0.4
1,334,186 + Pf6N2E2_1137 0.71 +0.6
1,334,193 - Pf6N2E2_1137 0.71 -2.1
1,334,265 + Pf6N2E2_1137 0.77 -1.6
1,334,266 - Pf6N2E2_1137 0.77 -3.6
1,334,266 - Pf6N2E2_1137 0.77 -0.9
1,334,266 - Pf6N2E2_1137 0.77 -1.0
1,334,288 + Pf6N2E2_1137 0.78 +0.8
1,334,288 + Pf6N2E2_1137 0.78 -2.3
1,334,288 + Pf6N2E2_1137 0.78 -1.0
1,334,288 + Pf6N2E2_1137 0.78 -0.7
1,334,289 - Pf6N2E2_1137 0.78 -1.0
1,334,289 - Pf6N2E2_1137 0.78 -1.9
1,334,289 - Pf6N2E2_1137 0.78 -0.8
1,334,289 - Pf6N2E2_1137 0.78 -0.5
1,334,289 - Pf6N2E2_1137 0.78 -0.9
1,334,289 - Pf6N2E2_1137 0.78 -0.7
1,334,289 - Pf6N2E2_1137 0.78 -1.5
1,334,289 - Pf6N2E2_1137 0.78 +0.6
1,334,448 - -0.9
1,334,474 + +1.0
1,334,607 + -0.7
1,334,607 + -1.0
1,334,607 + -0.7
1,334,608 - -1.2
1,334,608 - -0.9
1,334,675 + -2.0
1,334,676 - -1.4
1,334,687 + Pf6N2E2_1138 0.11 -0.7
1,334,687 + Pf6N2E2_1138 0.11 -1.6
1,334,687 + Pf6N2E2_1138 0.11 -1.2
1,334,743 + Pf6N2E2_1138 0.16 -0.7
1,334,744 - Pf6N2E2_1138 0.16 -1.9
1,335,004 + Pf6N2E2_1138 0.42 -1.8
1,335,004 + Pf6N2E2_1138 0.42 -0.7
1,335,005 - Pf6N2E2_1138 0.42 -0.5
1,335,005 - Pf6N2E2_1138 0.42 -1.1
1,335,013 + Pf6N2E2_1138 0.42 -0.7
1,335,013 + Pf6N2E2_1138 0.42 -1.0
1,335,014 - Pf6N2E2_1138 0.43 -1.1
1,335,533 - -1.2
1,335,533 - -0.3
1,335,661 + +0.7
1,335,674 + +0.2
1,335,675 - +0.1
1,335,727 + +1.5
1,335,727 + +2.8
1,335,727 + +0.7
1,335,728 - -1.3
1,335,728 - -0.3
1,335,728 - +0.1
1,335,728 - -0.3
1,335,733 - +0.4
1,335,758 + -0.3
1,335,759 - +0.7
1,335,865 - Pf6N2E2_1139 0.11 +1.0
1,335,867 + Pf6N2E2_1139 0.11 +0.8
1,335,867 + Pf6N2E2_1139 0.11 -1.1
1,335,868 - Pf6N2E2_1139 0.11 -0.2
1,335,868 - Pf6N2E2_1139 0.11 -0.1
1,336,053 + Pf6N2E2_1139 0.30 +0.4
1,336,054 - Pf6N2E2_1139 0.30 +0.6
1,336,072 + Pf6N2E2_1139 0.32 +0.7
1,336,072 + Pf6N2E2_1139 0.32 +1.9
1,336,073 - Pf6N2E2_1139 0.32 -0.1
1,336,174 - Pf6N2E2_1139 0.43 +0.5
1,336,266 + Pf6N2E2_1139 0.52 +0.9
1,336,305 + Pf6N2E2_1139 0.56 -0.5
1,336,305 + Pf6N2E2_1139 0.56 +0.2
1,336,306 - Pf6N2E2_1139 0.56 -0.6
1,336,306 - Pf6N2E2_1139 0.56 -0.2
1,336,416 + Pf6N2E2_1139 0.68 -0.4
1,336,417 - Pf6N2E2_1139 0.68 -0.9
1,336,417 - Pf6N2E2_1139 0.68 -0.2
1,336,417 - Pf6N2E2_1139 0.68 +0.0
1,336,417 - Pf6N2E2_1139 0.68 -0.6
1,336,417 - Pf6N2E2_1139 0.68 -0.3
1,336,418 + Pf6N2E2_1139 0.68 +0.7
1,336,497 + Pf6N2E2_1139 0.76 +1.2
1,336,498 - Pf6N2E2_1139 0.76 -0.4
1,336,498 - Pf6N2E2_1139 0.76 +0.4
1,336,498 - Pf6N2E2_1139 0.76 -0.1
1,336,498 - Pf6N2E2_1139 0.76 -0.8

Or see this region's nucleotide sequence