Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_674 and Pf1N1B4_675 are separated by 854 nucleotides Pf1N1B4_675 and Pf1N1B4_676 are separated by 146 nucleotides Pf1N1B4_676 and Pf1N1B4_677 are separated by 222 nucleotides
Pf1N1B4_674 - POSSIBLE CONSERVED MEMBRANE PROTEIN, at 770,943 to 772,274
_674
Pf1N1B4_675 - hypothetical protein, at 773,129 to 773,347
_675
Pf1N1B4_676 - FIG00953991: hypothetical protein, at 773,494 to 773,853
_676
Pf1N1B4_677 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 774,076 to 774,390
_677
Position (kb) 773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.140 kb on + strand, within Pf1N1B4_674 at 772.140 kb on + strand, within Pf1N1B4_674 at 772.141 kb on - strand at 772.142 kb on + strand at 772.142 kb on + strand at 772.143 kb on - strand at 772.143 kb on - strand at 772.143 kb on - strand at 772.143 kb on - strand at 772.143 kb on - strand at 772.150 kb on + strand at 772.150 kb on + strand at 772.150 kb on + strand at 772.243 kb on - strand at 772.244 kb on + strand at 772.244 kb on + strand at 772.245 kb on - strand at 772.272 kb on + strand at 772.272 kb on + strand at 772.273 kb on - strand at 772.287 kb on + strand at 772.294 kb on + strand at 772.295 kb on - strand at 772.309 kb on - strand at 772.314 kb on + strand at 772.314 kb on + strand at 772.315 kb on - strand at 772.315 kb on - strand at 772.315 kb on - strand at 772.331 kb on + strand at 772.332 kb on - strand at 772.332 kb on - strand at 772.332 kb on - strand at 772.332 kb on - strand at 772.332 kb on - strand at 772.337 kb on + strand at 772.337 kb on + strand at 772.338 kb on - strand at 772.338 kb on - strand at 772.338 kb on - strand at 772.338 kb on - strand at 772.355 kb on - strand at 772.359 kb on - strand at 772.359 kb on - strand at 772.388 kb on + strand at 772.388 kb on + strand at 772.395 kb on - strand at 772.395 kb on - strand at 772.428 kb on + strand at 772.429 kb on - strand at 772.485 kb on + strand at 772.597 kb on + strand at 772.651 kb on + strand at 772.652 kb on - strand at 772.672 kb on + strand at 772.672 kb on + strand at 772.672 kb on + strand at 772.673 kb on - strand at 772.673 kb on - strand at 772.716 kb on + strand at 772.717 kb on - strand at 772.717 kb on - strand at 772.720 kb on - strand at 772.734 kb on - strand at 772.748 kb on - strand at 772.825 kb on - strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.922 kb on + strand at 773.066 kb on + strand at 773.067 kb on - strand at 773.086 kb on + strand at 773.187 kb on - strand, within Pf1N1B4_675 at 773.187 kb on - strand, within Pf1N1B4_675 at 773.187 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.345 kb on + strand at 773.346 kb on - strand at 773.352 kb on + strand at 773.352 kb on + strand at 773.353 kb on - strand at 773.357 kb on - strand at 773.357 kb on - strand at 773.357 kb on - strand at 773.425 kb on + strand at 773.425 kb on + strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.474 kb on + strand at 773.475 kb on - strand at 773.528 kb on + strand at 773.529 kb on - strand at 773.529 kb on - strand at 773.597 kb on + strand, within Pf1N1B4_676 at 773.597 kb on + strand, within Pf1N1B4_676 at 773.597 kb on + strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.698 kb on - strand, within Pf1N1B4_676 at 773.761 kb on - strand, within Pf1N1B4_676 at 773.813 kb on + strand, within Pf1N1B4_676 at 773.896 kb on + strand at 773.897 kb on - strand at 773.918 kb on - strand at 773.918 kb on - strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.926 kb on - strand at 773.926 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.986 kb on + strand at 774.008 kb on + strand at 774.009 kb on - strand at 774.018 kb on + strand at 774.019 kb on - strand at 774.050 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.207 kb on - strand, within Pf1N1B4_677 at 774.207 kb on - strand, within Pf1N1B4_677 at 774.207 kb on - strand, within Pf1N1B4_677 at 774.226 kb on - strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 772,140 + Pf1N1B4_674 0.90 -1.8 772,140 + Pf1N1B4_674 0.90 +0.6 772,141 - -0.8 772,142 + -0.5 772,142 + -0.4 772,143 - -0.9 772,143 - +0.2 772,143 - +1.4 772,143 - +0.5 772,143 - -0.8 772,150 + +0.0 772,150 + +0.2 772,150 + +0.9 772,243 - -2.9 772,244 + -0.3 772,244 + -0.6 772,245 - -1.3 772,272 + +2.0 772,272 + +0.0 772,273 - -0.4 772,287 + -0.3 772,294 + -1.4 772,295 - +0.6 772,309 - -1.8 772,314 + +0.3 772,314 + +0.7 772,315 - +0.5 772,315 - -0.1 772,315 - -2.3 772,331 + +1.2 772,332 - -1.3 772,332 - -0.6 772,332 - -3.1 772,332 - -0.5 772,332 - +0.5 772,337 + -2.3 772,337 + +1.4 772,338 - -0.2 772,338 - -1.1 772,338 - -2.3 772,338 - -1.1 772,355 - -0.8 772,359 - +1.2 772,359 - +1.6 772,388 + -0.8 772,388 + -0.4 772,395 - -0.5 772,395 - +0.2 772,428 + +0.8 772,429 - -1.1 772,485 + -0.7 772,597 + -0.8 772,651 + +0.4 772,652 - -1.4 772,672 + +0.0 772,672 + -0.8 772,672 + -0.8 772,673 - -1.2 772,673 - +0.2 772,716 + -0.3 772,717 - +0.4 772,717 - -0.8 772,720 - +0.2 772,734 - -0.4 772,748 - -1.1 772,825 - -1.1 772,852 + -0.1 772,852 + -0.4 772,852 + +1.2 772,852 + +0.6 772,852 + -0.8 772,894 + -0.2 772,894 + +1.9 772,894 + -0.1 772,894 + -0.8 772,894 + -0.4 772,895 - -0.8 772,895 - +0.2 772,895 - -1.0 772,895 - -0.6 772,895 - -0.8 772,922 + -0.4 773,066 + +0.6 773,067 - -0.4 773,086 + -0.1 773,187 - Pf1N1B4_675 0.26 -0.8 773,187 - Pf1N1B4_675 0.26 -0.0 773,187 - Pf1N1B4_675 0.26 -0.9 773,274 - Pf1N1B4_675 0.66 -1.0 773,274 - Pf1N1B4_675 0.66 -0.8 773,274 - Pf1N1B4_675 0.66 +0.4 773,345 + +0.3 773,346 - -1.4 773,352 + +0.2 773,352 + -1.4 773,353 - -0.7 773,357 - -0.6 773,357 - -0.1 773,357 - +0.5 773,425 + -0.1 773,425 + -0.6 773,426 - -0.3 773,426 - -1.4 773,426 - +0.5 773,426 - +1.2 773,426 - -0.8 773,474 + -0.8 773,475 - +0.5 773,528 + +1.7 773,529 - -0.0 773,529 - -1.1 773,597 + Pf1N1B4_676 0.29 +0.8 773,597 + Pf1N1B4_676 0.29 -0.3 773,597 + Pf1N1B4_676 0.29 -0.1 773,598 - Pf1N1B4_676 0.29 -0.2 773,598 - Pf1N1B4_676 0.29 +1.2 773,598 - Pf1N1B4_676 0.29 -1.0 773,698 - Pf1N1B4_676 0.57 +0.6 773,761 - Pf1N1B4_676 0.74 +1.2 773,813 + Pf1N1B4_676 0.89 +1.9 773,896 + +0.2 773,897 - +0.2 773,918 - +1.2 773,918 - -0.3 773,925 + +0.4 773,925 + -1.6 773,925 + +0.4 773,925 + -0.0 773,926 - +0.0 773,926 - -0.1 773,928 - +0.3 773,928 - -0.3 773,928 - -0.6 773,928 - +0.0 773,986 + +2.2 774,008 + +0.8 774,009 - -0.0 774,018 + -0.8 774,019 - +0.5 774,050 + -0.2 774,052 + +0.8 774,052 + -0.0 774,052 + +0.2 774,052 + +1.2 774,052 + +0.4 774,052 + -2.0 774,052 + -1.4 774,052 + -0.6 774,052 + -1.4 774,052 + +1.9 774,052 + -0.8 774,053 - -0.2 774,053 - -0.5 774,053 - -0.7 774,053 - +0.2 774,053 - -0.2 774,053 - +0.2 774,053 - +1.2 774,053 - +0.6 774,053 - +0.2 774,053 - -0.2 774,207 - Pf1N1B4_677 0.42 +0.8 774,207 - Pf1N1B4_677 0.42 +0.2 774,207 - Pf1N1B4_677 0.42 -1.2 774,226 - Pf1N1B4_677 0.48 +1.9 774,284 + Pf1N1B4_677 0.66 -1.6 774,284 + Pf1N1B4_677 0.66 +0.5 774,284 + Pf1N1B4_677 0.66 +1.2 774,284 + Pf1N1B4_677 0.66 -0.4 774,284 + Pf1N1B4_677 0.66 -0.1 774,284 + Pf1N1B4_677 0.66 +0.2 774,285 - Pf1N1B4_677 0.66 +0.1 774,285 - Pf1N1B4_677 0.66 -2.4 774,285 - Pf1N1B4_677 0.66 +1.2 774,285 - Pf1N1B4_677 0.66 +0.0 774,285 - Pf1N1B4_677 0.66 +0.4 774,285 - Pf1N1B4_677 0.66 +1.2 774,285 - Pf1N1B4_677 0.66 -1.0 774,285 - Pf1N1B4_677 0.66 -0.4
Or see this region's nucleotide sequence