Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6034 and Pf1N1B4_6035 are separated by 56 nucleotides Pf1N1B4_6035 and Pf1N1B4_6036 are separated by 179 nucleotides Pf1N1B4_6036 and Pf1N1B4_6037 are separated by 336 nucleotides
Pf1N1B4_6034 - D-ribose ABC transporter, ATPase component RbsA <small>(from data)</small>, at 497,933 to 499,486
_6034
Pf1N1B4_6035 - D-ribose ABC transporter, substrate-binding component RbsB <small>(from data)</small>, at 499,543 to 500,499
_6035
Pf1N1B4_6036 - FIG00953132: hypothetical protein, at 500,679 to 501,131
_6036
Pf1N1B4_6037 - L-asparaginase (EC 3.5.1.1), at 501,468 to 502,556
_6037
Position (kb) 499
500
501 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 498.566 kb on - strand, within Pf1N1B4_6034 at 498.590 kb on + strand, within Pf1N1B4_6034 at 498.590 kb on + strand, within Pf1N1B4_6034 at 498.792 kb on + strand, within Pf1N1B4_6034 at 498.792 kb on + strand, within Pf1N1B4_6034 at 498.793 kb on - strand, within Pf1N1B4_6034 at 498.888 kb on + strand at 498.888 kb on + strand, within Pf1N1B4_6034 at 498.888 kb on + strand at 498.889 kb on - strand, within Pf1N1B4_6034 at 498.889 kb on - strand, within Pf1N1B4_6034 at 498.889 kb on - strand, within Pf1N1B4_6034 at 498.889 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.067 kb on - strand, within Pf1N1B4_6034 at 499.342 kb on + strand at 499.342 kb on + strand at 499.342 kb on + strand at 499.431 kb on + strand at 499.431 kb on + strand at 499.431 kb on + strand at 499.431 kb on + strand at 499.486 kb on + strand at 499.544 kb on + strand at 499.544 kb on + strand at 499.544 kb on + strand at 499.545 kb on - strand at 499.545 kb on - strand at 499.545 kb on - strand at 499.777 kb on + strand, within Pf1N1B4_6035 at 499.795 kb on - strand, within Pf1N1B4_6035 at 500.027 kb on + strand, within Pf1N1B4_6035 at 500.027 kb on + strand, within Pf1N1B4_6035 at 500.028 kb on - strand, within Pf1N1B4_6035 at 500.068 kb on + strand, within Pf1N1B4_6035 at 500.069 kb on - strand, within Pf1N1B4_6035 at 500.324 kb on + strand, within Pf1N1B4_6035 at 500.325 kb on - strand at 500.516 kb on + strand at 500.608 kb on + strand at 500.608 kb on + strand at 500.608 kb on + strand at 500.609 kb on - strand at 500.609 kb on - strand at 500.609 kb on - strand at 500.675 kb on + strand at 500.676 kb on - strand at 500.676 kb on - strand at 500.676 kb on - strand at 500.910 kb on + strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand at 501.002 kb on + strand, within Pf1N1B4_6036 at 501.003 kb on - strand, within Pf1N1B4_6036 at 501.065 kb on + strand at 501.122 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.157 kb on - strand at 501.248 kb on - strand at 501.255 kb on - strand at 501.344 kb on + strand at 501.385 kb on + strand at 501.385 kb on + strand at 501.386 kb on - strand at 501.422 kb on + strand at 501.422 kb on + strand at 501.452 kb on - strand at 501.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 498,566 - Pf1N1B4_6034 0.41 -1.7 498,590 + Pf1N1B4_6034 0.42 -2.4 498,590 + Pf1N1B4_6034 0.42 +0.4 498,792 + Pf1N1B4_6034 0.55 -0.9 498,792 + Pf1N1B4_6034 0.55 -2.1 498,793 - Pf1N1B4_6034 0.55 -3.0 498,888 + +0.9 498,888 + Pf1N1B4_6034 0.61 -2.6 498,888 + -1.4 498,889 - Pf1N1B4_6034 0.62 -1.7 498,889 - Pf1N1B4_6034 0.62 -0.7 498,889 - Pf1N1B4_6034 0.62 -1.7 498,889 - Pf1N1B4_6034 0.62 -0.3 499,067 - Pf1N1B4_6034 0.73 -1.4 499,067 - Pf1N1B4_6034 0.73 -2.8 499,067 - Pf1N1B4_6034 0.73 -0.4 499,067 - Pf1N1B4_6034 0.73 -1.4 499,067 - Pf1N1B4_6034 0.73 -2.7 499,342 + -3.9 499,342 + -3.0 499,342 + -1.4 499,431 + +0.7 499,431 + -1.4 499,431 + -1.4 499,431 + -3.7 499,486 + -0.8 499,544 + -0.1 499,544 + -0.4 499,544 + -2.9 499,545 - -2.1 499,545 - -0.8 499,545 - -0.8 499,777 + Pf1N1B4_6035 0.24 -2.8 499,795 - Pf1N1B4_6035 0.26 -1.9 500,027 + Pf1N1B4_6035 0.51 -1.3 500,027 + Pf1N1B4_6035 0.51 -2.1 500,028 - Pf1N1B4_6035 0.51 -2.1 500,068 + Pf1N1B4_6035 0.55 -0.7 500,069 - Pf1N1B4_6035 0.55 -1.1 500,324 + Pf1N1B4_6035 0.82 -2.1 500,325 - -0.7 500,516 + +0.3 500,608 + -1.7 500,608 + -1.9 500,608 + +0.3 500,609 - -2.3 500,609 - -0.1 500,609 - -0.7 500,675 + -1.1 500,676 - -1.6 500,676 - -1.3 500,676 - -0.8 500,910 + Pf1N1B4_6036 0.51 +0.3 500,925 - Pf1N1B4_6036 0.54 -0.7 500,925 - Pf1N1B4_6036 0.54 -0.7 500,925 - Pf1N1B4_6036 0.54 -1.7 500,925 - +0.3 501,002 + Pf1N1B4_6036 0.71 +0.0 501,003 - Pf1N1B4_6036 0.72 +0.7 501,065 + -0.1 501,122 + -0.7 501,131 + +0.3 501,131 + -0.8 501,131 + -0.6 501,131 + -0.3 501,131 + +0.2 501,131 + +0.2 501,131 + -0.1 501,131 + +1.2 501,131 + -0.4 501,131 + +0.1 501,131 + +0.1 501,132 - -1.7 501,132 - +0.3 501,132 - +0.1 501,132 - +0.5 501,132 - -0.7 501,132 - +1.3 501,157 - +0.2 501,248 - +0.9 501,255 - +0.9 501,344 + +0.3 501,385 + +2.9 501,385 + +0.9 501,386 - -0.7 501,422 + +0.2 501,422 + -1.1 501,452 - +0.7 501,467 - -1.6
Or see this region's nucleotide sequence