Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_227 and Pf1N1B4_228 are separated by 74 nucleotides Pf1N1B4_228 and Pf1N1B4_229 are separated by 90 nucleotides Pf1N1B4_229 and Pf1N1B4_230 are separated by 463 nucleotides
Pf1N1B4_227 - FIG074102: hypothetical protein, at 288,479 to 288,763
_227
Pf1N1B4_228 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 288,838 to 289,641
_228
Pf1N1B4_229 - Chemotaxis protein CheV (EC 2.7.3.-), at 289,732 to 290,667
_229
Pf1N1B4_230 - FIG00953472: hypothetical protein, at 291,131 to 291,601
_230
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 288.740 kb on + strand at 288.740 kb on + strand at 288.740 kb on + strand at 288.740 kb on + strand at 288.741 kb on - strand at 288.839 kb on + strand at 288.840 kb on - strand at 289.072 kb on - strand, within Pf1N1B4_228 at 289.072 kb on - strand, within Pf1N1B4_228 at 289.083 kb on - strand, within Pf1N1B4_228 at 289.661 kb on - strand at 289.675 kb on - strand at 289.675 kb on - strand at 289.677 kb on - strand at 289.722 kb on - strand at 289.741 kb on + strand at 289.741 kb on + strand at 289.742 kb on - strand at 289.742 kb on - strand at 289.742 kb on - strand at 289.742 kb on - strand at 289.771 kb on + strand at 289.772 kb on - strand at 289.880 kb on + strand, within Pf1N1B4_229 at 289.880 kb on + strand, within Pf1N1B4_229 at 289.880 kb on + strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 290.107 kb on - strand, within Pf1N1B4_229 at 290.107 kb on - strand, within Pf1N1B4_229 at 290.193 kb on - strand, within Pf1N1B4_229 at 290.193 kb on - strand, within Pf1N1B4_229 at 290.273 kb on + strand, within Pf1N1B4_229 at 290.274 kb on - strand, within Pf1N1B4_229 at 290.274 kb on - strand, within Pf1N1B4_229 at 290.378 kb on + strand at 290.392 kb on - strand, within Pf1N1B4_229 at 290.626 kb on + strand at 290.626 kb on + strand at 290.626 kb on + strand at 290.627 kb on - strand at 290.644 kb on + strand at 290.702 kb on - strand at 290.848 kb on + strand at 290.849 kb on + strand at 290.849 kb on + strand at 290.850 kb on - strand at 290.850 kb on - strand at 290.850 kb on - strand at 290.877 kb on - strand at 290.879 kb on + strand at 290.880 kb on - strand at 290.880 kb on - strand at 290.901 kb on - strand at 291.071 kb on + strand at 291.071 kb on + strand at 291.071 kb on + strand at 291.071 kb on + strand at 291.071 kb on + strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.072 kb on - strand at 291.126 kb on + strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.127 kb on - strand at 291.344 kb on - strand, within Pf1N1B4_230 at 291.505 kb on - strand, within Pf1N1B4_230 at 291.505 kb on - strand, within Pf1N1B4_230 at 291.600 kb on - strand at 291.600 kb on - strand at 291.600 kb on - strand at 291.633 kb on + strand at 291.653 kb on - strand at 291.654 kb on + strand at 291.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 288,740 + +0.4 288,740 + -0.2 288,740 + -0.5 288,740 + -0.4 288,741 - -0.8 288,839 + +1.6 288,840 - +1.6 289,072 - Pf1N1B4_228 0.29 -1.0 289,072 - Pf1N1B4_228 0.29 -0.6 289,083 - Pf1N1B4_228 0.30 +0.0 289,661 - -0.3 289,675 - -1.3 289,675 - -1.1 289,677 - -0.5 289,722 - -0.6 289,741 + -1.6 289,741 + -0.6 289,742 - -0.3 289,742 - -0.2 289,742 - +0.7 289,742 - +0.3 289,771 + -0.6 289,772 - +0.6 289,880 + Pf1N1B4_229 0.16 +0.1 289,880 + Pf1N1B4_229 0.16 +0.1 289,880 + Pf1N1B4_229 0.16 -0.6 289,881 - Pf1N1B4_229 0.16 -0.8 289,881 - Pf1N1B4_229 0.16 -2.3 289,881 - Pf1N1B4_229 0.16 +0.4 289,881 - Pf1N1B4_229 0.16 -0.3 290,107 - Pf1N1B4_229 0.40 -0.3 290,107 - Pf1N1B4_229 0.40 -0.8 290,193 - Pf1N1B4_229 0.49 -1.8 290,193 - Pf1N1B4_229 0.49 -1.0 290,273 + Pf1N1B4_229 0.58 +0.4 290,274 - Pf1N1B4_229 0.58 -0.8 290,274 - Pf1N1B4_229 0.58 -1.0 290,378 + -0.4 290,392 - Pf1N1B4_229 0.71 -0.2 290,626 + +1.4 290,626 + -0.3 290,626 + -0.0 290,627 - -0.1 290,644 + -0.8 290,702 - -0.2 290,848 + +1.0 290,849 + -1.6 290,849 + +0.1 290,850 - -0.7 290,850 - -0.2 290,850 - -0.3 290,877 - -0.6 290,879 + -0.4 290,880 - -0.3 290,880 - -0.3 290,901 - +0.7 291,071 + +0.7 291,071 + -1.0 291,071 + -0.7 291,071 + -0.9 291,071 + -0.4 291,072 - +0.6 291,072 - -1.3 291,072 - -1.2 291,072 - -0.0 291,072 - +0.4 291,072 - +0.2 291,072 - -0.0 291,072 - -1.6 291,072 - -1.0 291,072 - +0.5 291,126 + +3.0 291,127 - -0.9 291,127 - +0.4 291,127 - +0.4 291,127 - -0.3 291,127 - +0.3 291,127 - +0.4 291,127 - -1.2 291,127 - -0.1 291,127 - +1.1 291,127 - -0.6 291,344 - Pf1N1B4_230 0.45 -0.4 291,505 - Pf1N1B4_230 0.79 +0.8 291,505 - Pf1N1B4_230 0.79 -0.0 291,600 - -0.6 291,600 - -1.8 291,600 - -0.5 291,633 + -0.6 291,653 - -0.2 291,654 + -1.6 291,655 - -0.2
Or see this region's nucleotide sequence