Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_215 and Pf1N1B4_216 are separated by 381 nucleotides Pf1N1B4_216 and Pf1N1B4_217 are separated by 132 nucleotides
Pf1N1B4_215 - Pyoverdine chromophore precursor synthetase PvdL, at 267,867 to 275,390
_215
Pf1N1B4_216 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 275,772 to 276,320
_216
Pf1N1B4_217 - Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase, at 276,453 to 277,466
_217
Position (kb) 275
276
277 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 274.888 kb on + strand at 274.888 kb on + strand at 274.888 kb on + strand at 275.134 kb on + strand at 275.161 kb on + strand at 275.162 kb on - strand at 275.563 kb on + strand at 275.564 kb on - strand at 275.564 kb on - strand at 275.564 kb on - strand at 275.606 kb on + strand at 275.607 kb on - strand at 275.714 kb on - strand at 275.749 kb on + strand at 275.750 kb on - strand at 275.813 kb on - strand at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.968 kb on - strand, within Pf1N1B4_216 at 276.177 kb on + strand, within Pf1N1B4_216 at 276.177 kb on + strand at 276.346 kb on + strand at 276.363 kb on + strand at 276.363 kb on + strand at 276.364 kb on - strand at 276.368 kb on + strand at 276.368 kb on + strand at 276.368 kb on + strand at 276.369 kb on - strand at 276.392 kb on - strand at 276.392 kb on - strand at 276.640 kb on + strand, within Pf1N1B4_217 at 276.641 kb on - strand, within Pf1N1B4_217 at 276.641 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand at 276.743 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand at 276.743 kb on - strand, within Pf1N1B4_217 at 276.775 kb on + strand, within Pf1N1B4_217 at 276.776 kb on - strand, within Pf1N1B4_217 at 276.776 kb on - strand, within Pf1N1B4_217 at 276.787 kb on + strand, within Pf1N1B4_217 at 276.788 kb on - strand, within Pf1N1B4_217 at 276.788 kb on - strand, within Pf1N1B4_217 at 276.831 kb on - strand at 276.831 kb on - strand, within Pf1N1B4_217 at 276.860 kb on - strand, within Pf1N1B4_217 at 276.961 kb on - strand, within Pf1N1B4_217 at 277.081 kb on + strand, within Pf1N1B4_217
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 274,888 + +0.7 274,888 + -0.4 274,888 + +0.1 275,134 + +0.3 275,161 + -0.6 275,162 - -2.1 275,563 + +0.7 275,564 - +0.3 275,564 - -0.3 275,564 - -0.1 275,606 + +1.0 275,607 - -1.8 275,714 - +2.3 275,749 + +1.0 275,750 - +1.3 275,813 - -0.0 275,967 + Pf1N1B4_216 0.36 +0.5 275,967 + Pf1N1B4_216 0.36 -0.6 275,967 + Pf1N1B4_216 0.36 -1.0 275,967 + Pf1N1B4_216 0.36 -1.0 275,967 + Pf1N1B4_216 0.36 -0.6 275,968 - Pf1N1B4_216 0.36 -0.6 276,177 + Pf1N1B4_216 0.74 -1.6 276,177 + -1.0 276,346 + -0.6 276,363 + -0.6 276,363 + +0.8 276,364 - +3.0 276,368 + -1.0 276,368 + -1.1 276,368 + +0.5 276,369 - -1.3 276,392 - +0.3 276,392 - -0.9 276,640 + Pf1N1B4_217 0.18 -0.3 276,641 - Pf1N1B4_217 0.19 -0.9 276,641 - Pf1N1B4_217 0.19 +0.1 276,743 - Pf1N1B4_217 0.29 -0.8 276,743 - Pf1N1B4_217 0.29 -1.0 276,743 - +1.0 276,743 - Pf1N1B4_217 0.29 +0.0 276,743 - +1.0 276,743 - Pf1N1B4_217 0.29 +0.3 276,775 + Pf1N1B4_217 0.32 +0.7 276,776 - Pf1N1B4_217 0.32 -0.6 276,776 - Pf1N1B4_217 0.32 -0.4 276,787 + Pf1N1B4_217 0.33 -0.2 276,788 - Pf1N1B4_217 0.33 +0.3 276,788 - Pf1N1B4_217 0.33 -0.3 276,831 - +1.3 276,831 - Pf1N1B4_217 0.37 +0.8 276,860 - Pf1N1B4_217 0.40 +1.2 276,961 - Pf1N1B4_217 0.50 -1.5 277,081 + Pf1N1B4_217 0.62 +0.3
Or see this region's nucleotide sequence