Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1703

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1702 and Pf1N1B4_1703 overlap by 11 nucleotidesPf1N1B4_1703 and Pf1N1B4_1704 are separated by 446 nucleotidesPf1N1B4_1704 and Pf1N1B4_1705 overlap by 4 nucleotides Pf1N1B4_1702 - Methionine ABC transporter ATP-binding protein, at 1,948,617 to 1,949,738 _1702 Pf1N1B4_1703 - Methionine ABC transporter permease protein, at 1,949,728 to 1,950,372 _1703 Pf1N1B4_1704 - hypothetical protein, at 1,950,819 to 1,950,932 _1704 Pf1N1B4_1705 - SAM-dependent methyltransferases, at 1,950,929 to 1,951,558 _1705 Position (kb) 1949 1950 1951Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1948.734 kb on + strand, within Pf1N1B4_1702at 1948.735 kb on - strand, within Pf1N1B4_1702at 1948.735 kb on - strand, within Pf1N1B4_1702at 1949.727 kb on + strandat 1949.727 kb on + strandat 1949.727 kb on + strandat 1949.727 kb on + strandat 1949.728 kb on - strandat 1949.728 kb on - strandat 1949.857 kb on + strand, within Pf1N1B4_1703at 1949.857 kb on + strand, within Pf1N1B4_1703at 1949.857 kb on + strand, within Pf1N1B4_1703at 1949.858 kb on - strand, within Pf1N1B4_1703at 1949.977 kb on + strand, within Pf1N1B4_1703at 1949.978 kb on - strand, within Pf1N1B4_1703at 1950.175 kb on - strand, within Pf1N1B4_1703at 1950.175 kb on - strand, within Pf1N1B4_1703at 1950.281 kb on + strand, within Pf1N1B4_1703at 1950.281 kb on + strand, within Pf1N1B4_1703at 1950.363 kb on + strandat 1950.379 kb on + strandat 1950.379 kb on + strandat 1950.379 kb on + strandat 1950.380 kb on - strandat 1950.402 kb on + strandat 1950.402 kb on + strandat 1950.403 kb on - strandat 1950.541 kb on + strandat 1950.542 kb on - strandat 1950.542 kb on - strandat 1950.548 kb on + strandat 1950.562 kb on + strandat 1950.562 kb on + strandat 1950.586 kb on + strandat 1950.586 kb on + strandat 1950.586 kb on + strandat 1950.587 kb on - strandat 1950.587 kb on - strandat 1950.607 kb on + strandat 1950.687 kb on + strandat 1950.688 kb on - strandat 1950.892 kb on + strand, within Pf1N1B4_1704at 1950.893 kb on - strand, within Pf1N1B4_1704at 1950.893 kb on - strand, within Pf1N1B4_1704at 1950.893 kb on - strand, within Pf1N1B4_1704at 1950.893 kb on - strand, within Pf1N1B4_1704at 1950.894 kb on + strand, within Pf1N1B4_1704at 1950.895 kb on - strand, within Pf1N1B4_1704at 1950.912 kb on + strand, within Pf1N1B4_1704at 1950.912 kb on + strand, within Pf1N1B4_1704at 1950.912 kb on + strand, within Pf1N1B4_1704at 1950.913 kb on - strand, within Pf1N1B4_1704at 1950.983 kb on + strandat 1950.983 kb on + strandat 1950.983 kb on + strandat 1950.983 kb on + strandat 1950.983 kb on + strandat 1950.984 kb on - strandat 1950.984 kb on - strandat 1950.984 kb on - strandat 1950.984 kb on - strandat 1950.984 kb on - strandat 1950.984 kb on - strandat 1951.063 kb on + strand, within Pf1N1B4_1705

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,948,734 + Pf1N1B4_1702 0.10 +1.0
1,948,735 - Pf1N1B4_1702 0.11 -1.4
1,948,735 - Pf1N1B4_1702 0.11 +0.0
1,949,727 + -1.9
1,949,727 + -1.2
1,949,727 + +1.2
1,949,727 + +0.9
1,949,728 - +0.6
1,949,728 - +0.6
1,949,857 + Pf1N1B4_1703 0.20 -1.4
1,949,857 + Pf1N1B4_1703 0.20 -0.5
1,949,857 + Pf1N1B4_1703 0.20 +0.6
1,949,858 - Pf1N1B4_1703 0.20 -0.7
1,949,977 + Pf1N1B4_1703 0.39 -0.9
1,949,978 - Pf1N1B4_1703 0.39 -0.1
1,950,175 - Pf1N1B4_1703 0.69 -2.1
1,950,175 - Pf1N1B4_1703 0.69 +1.0
1,950,281 + Pf1N1B4_1703 0.86 -1.2
1,950,281 + Pf1N1B4_1703 0.86 +0.0
1,950,363 + +0.1
1,950,379 + +0.3
1,950,379 + +0.2
1,950,379 + -0.7
1,950,380 - +0.1
1,950,402 + -0.4
1,950,402 + -1.6
1,950,403 - -0.3
1,950,541 + +0.8
1,950,542 - -0.3
1,950,542 - +0.2
1,950,548 + +0.3
1,950,562 + -0.7
1,950,562 + +0.3
1,950,586 + +0.6
1,950,586 + -0.7
1,950,586 + -1.2
1,950,587 - +1.0
1,950,587 - +0.9
1,950,607 + -1.0
1,950,687 + +0.3
1,950,688 - +0.9
1,950,892 + Pf1N1B4_1704 0.64 -1.0
1,950,893 - Pf1N1B4_1704 0.65 +0.1
1,950,893 - Pf1N1B4_1704 0.65 +0.6
1,950,893 - Pf1N1B4_1704 0.65 -0.4
1,950,893 - Pf1N1B4_1704 0.65 +1.2
1,950,894 + Pf1N1B4_1704 0.66 +0.0
1,950,895 - Pf1N1B4_1704 0.67 +0.4
1,950,912 + Pf1N1B4_1704 0.82 +0.3
1,950,912 + Pf1N1B4_1704 0.82 +0.4
1,950,912 + Pf1N1B4_1704 0.82 +0.3
1,950,913 - Pf1N1B4_1704 0.82 +0.3
1,950,983 + -0.3
1,950,983 + +0.3
1,950,983 + +1.3
1,950,983 + -0.4
1,950,983 + -0.7
1,950,984 - +3.6
1,950,984 - -0.3
1,950,984 - -0.9
1,950,984 - -0.9
1,950,984 - +1.6
1,950,984 - +0.6
1,951,063 + Pf1N1B4_1705 0.21 +1.0

Or see this region's nucleotide sequence