Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00080 and LRK54_RS00085 are separated by 153 nucleotides LRK54_RS00085 and LRK54_RS00090 are separated by 8 nucleotides
LRK54_RS00080: LRK54_RS00080 - helix-turn-helix domain-containing protein, at 15,263 to 16,258
_RS00080
LRK54_RS00085: LRK54_RS00085 - tetratricopeptide repeat protein, at 16,412 to 17,062
_RS00085
LRK54_RS00090: LRK54_RS00090 - outer membrane protein assembly factor BamB, at 17,071 to 18,270
_RS00090
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.523 kb on + strand, within LRK54_RS00080 at 15.524 kb on - strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.534 kb on - strand, within LRK54_RS00080 at 15.550 kb on + strand, within LRK54_RS00080 at 15.657 kb on - strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.723 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.296 kb on - strand at 16.296 kb on - strand at 16.427 kb on + strand at 16.427 kb on + strand at 16.427 kb on + strand at 16.436 kb on + strand at 16.583 kb on + strand, within LRK54_RS00085 at 16.661 kb on + strand, within LRK54_RS00085 at 16.662 kb on - strand, within LRK54_RS00085 at 16.683 kb on + strand, within LRK54_RS00085 at 16.886 kb on + strand, within LRK54_RS00085 at 16.886 kb on + strand, within LRK54_RS00085 at 16.887 kb on - strand, within LRK54_RS00085 at 16.961 kb on + strand, within LRK54_RS00085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 15,485 + LRK54_RS00080 0.22 +0.4 15,485 + LRK54_RS00080 0.22 -0.1 15,485 + LRK54_RS00080 0.22 +0.4 15,485 + LRK54_RS00080 0.22 +1.0 15,485 + LRK54_RS00080 0.22 +0.2 15,509 + LRK54_RS00080 0.25 +0.0 15,509 + LRK54_RS00080 0.25 +0.1 15,509 + LRK54_RS00080 0.25 -0.8 15,509 + LRK54_RS00080 0.25 +0.4 15,509 + LRK54_RS00080 0.25 -0.6 15,509 + LRK54_RS00080 0.25 +1.4 15,509 + LRK54_RS00080 0.25 -0.1 15,509 + LRK54_RS00080 0.25 +0.4 15,509 + LRK54_RS00080 0.25 +0.4 15,510 - LRK54_RS00080 0.25 +0.2 15,510 - LRK54_RS00080 0.25 -0.3 15,510 - LRK54_RS00080 0.25 +0.4 15,510 - LRK54_RS00080 0.25 -1.1 15,510 - LRK54_RS00080 0.25 -1.2 15,510 - LRK54_RS00080 0.25 +1.4 15,510 - LRK54_RS00080 0.25 -1.8 15,510 - LRK54_RS00080 0.25 +0.4 15,521 + LRK54_RS00080 0.26 +0.2 15,521 + LRK54_RS00080 0.26 +0.4 15,521 + LRK54_RS00080 0.26 +0.4 15,521 + LRK54_RS00080 0.26 -0.1 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 +0.2 15,521 + LRK54_RS00080 0.26 +0.4 15,521 + LRK54_RS00080 0.26 -1.2 15,521 + LRK54_RS00080 0.26 +1.4 15,521 + LRK54_RS00080 0.26 -1.4 15,521 + LRK54_RS00080 0.26 +0.4 15,521 + LRK54_RS00080 0.26 +0.2 15,521 + LRK54_RS00080 0.26 -0.6 15,521 + LRK54_RS00080 0.26 -0.4 15,521 + LRK54_RS00080 0.26 +0.7 15,521 + LRK54_RS00080 0.26 -1.0 15,521 + LRK54_RS00080 0.26 +0.4 15,521 + LRK54_RS00080 0.26 -0.1 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 +0.2 15,521 + LRK54_RS00080 0.26 -1.3 15,521 + LRK54_RS00080 0.26 +0.4 15,522 - LRK54_RS00080 0.26 +0.4 15,522 - LRK54_RS00080 0.26 +0.2 15,522 - LRK54_RS00080 0.26 -0.8 15,522 - LRK54_RS00080 0.26 -1.1 15,522 - LRK54_RS00080 0.26 +0.7 15,522 - LRK54_RS00080 0.26 +1.4 15,522 - LRK54_RS00080 0.26 +0.2 15,522 - LRK54_RS00080 0.26 -0.8 15,522 - LRK54_RS00080 0.26 -0.9 15,522 - LRK54_RS00080 0.26 -0.3 15,522 - LRK54_RS00080 0.26 +0.0 15,522 - LRK54_RS00080 0.26 +2.0 15,522 - LRK54_RS00080 0.26 -0.3 15,522 - LRK54_RS00080 0.26 -0.6 15,522 - LRK54_RS00080 0.26 +0.4 15,522 - LRK54_RS00080 0.26 -0.4 15,522 - LRK54_RS00080 0.26 +0.2 15,522 - LRK54_RS00080 0.26 -0.1 15,522 - LRK54_RS00080 0.26 -0.6 15,523 + LRK54_RS00080 0.26 -0.6 15,524 - LRK54_RS00080 0.26 +0.7 15,533 + LRK54_RS00080 0.27 -0.3 15,533 + LRK54_RS00080 0.27 -1.0 15,533 + LRK54_RS00080 0.27 -0.8 15,533 + LRK54_RS00080 0.27 -0.3 15,533 + LRK54_RS00080 0.27 -0.1 15,534 - LRK54_RS00080 0.27 +0.4 15,550 + LRK54_RS00080 0.29 +0.4 15,657 - LRK54_RS00080 0.40 +0.4 15,674 + LRK54_RS00080 0.41 -0.3 15,674 + LRK54_RS00080 0.41 +0.0 15,674 + LRK54_RS00080 0.41 -1.8 15,674 + LRK54_RS00080 0.41 -1.5 15,674 + LRK54_RS00080 0.41 -0.9 15,674 + LRK54_RS00080 0.41 -0.6 15,674 + LRK54_RS00080 0.41 -1.3 15,674 + LRK54_RS00080 0.41 -1.0 15,675 - LRK54_RS00080 0.41 +1.0 15,675 - LRK54_RS00080 0.41 -0.8 15,675 - LRK54_RS00080 0.41 -1.1 15,675 - LRK54_RS00080 0.41 +0.2 15,675 - LRK54_RS00080 0.41 +0.7 15,675 - LRK54_RS00080 0.41 -0.9 15,675 - LRK54_RS00080 0.41 -0.6 15,723 + LRK54_RS00080 0.46 -0.4 16,064 + LRK54_RS00080 0.80 +0.2 16,064 + LRK54_RS00080 0.80 -1.1 16,064 + LRK54_RS00080 0.80 +0.7 16,064 + LRK54_RS00080 0.80 +1.7 16,064 + LRK54_RS00080 0.80 +0.5 16,065 - LRK54_RS00080 0.81 -0.3 16,065 - LRK54_RS00080 0.81 +0.1 16,065 - LRK54_RS00080 0.81 -0.5 16,065 - LRK54_RS00080 0.81 +0.3 16,065 - LRK54_RS00080 0.81 +0.2 16,065 - LRK54_RS00080 0.81 +0.1 16,296 - -1.1 16,296 - -0.7 16,427 + -0.4 16,427 + -0.6 16,427 + -2.1 16,436 + -1.1 16,583 + LRK54_RS00085 0.26 -0.1 16,661 + LRK54_RS00085 0.38 -1.9 16,662 - LRK54_RS00085 0.38 -0.1 16,683 + LRK54_RS00085 0.42 -1.1 16,886 + LRK54_RS00085 0.73 +0.0 16,886 + LRK54_RS00085 0.73 -0.8 16,887 - LRK54_RS00085 0.73 +0.0 16,961 + LRK54_RS00085 0.84 +0.0
Or see this region's nucleotide sequence