Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00900 and HSERO_RS00905 are separated by 257 nucleotides HSERO_RS00905 and HSERO_RS00910 are separated by 198 nucleotides HSERO_RS00910 and HSERO_RS00915 are separated by 64 nucleotides
HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 <small>(from data)</small>, at 187,220 to 187,945
_RS00900
HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 188,203 to 191,895
_RS00905
HSERO_RS00910: HSERO_RS00910 - peptidase, at 192,094 to 192,630
_RS00910
HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041
_RS00915
Position (kb) 188
189
190
191
192 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 187.682 kb on + strand, within HSERO_RS00900 at 188.009 kb on + strand at 188.045 kb on - strand at 188.056 kb on + strand at 188.193 kb on + strand at 188.334 kb on - strand at 188.740 kb on + strand, within HSERO_RS00905 at 188.741 kb on + strand, within HSERO_RS00905 at 188.748 kb on - strand, within HSERO_RS00905 at 188.759 kb on - strand, within HSERO_RS00905 at 189.056 kb on + strand, within HSERO_RS00905 at 189.208 kb on + strand, within HSERO_RS00905 at 189.339 kb on + strand, within HSERO_RS00905 at 189.347 kb on - strand, within HSERO_RS00905 at 189.348 kb on + strand, within HSERO_RS00905 at 189.628 kb on - strand, within HSERO_RS00905 at 189.633 kb on - strand at 189.749 kb on + strand, within HSERO_RS00905 at 189.843 kb on + strand, within HSERO_RS00905 at 189.843 kb on + strand, within HSERO_RS00905 at 189.885 kb on - strand, within HSERO_RS00905 at 189.994 kb on + strand, within HSERO_RS00905 at 190.002 kb on - strand, within HSERO_RS00905 at 190.275 kb on - strand, within HSERO_RS00905 at 190.275 kb on - strand, within HSERO_RS00905 at 190.499 kb on + strand, within HSERO_RS00905 at 190.505 kb on - strand, within HSERO_RS00905 at 190.576 kb on - strand, within HSERO_RS00905 at 190.724 kb on + strand, within HSERO_RS00905 at 191.116 kb on - strand, within HSERO_RS00905 at 191.363 kb on - strand, within HSERO_RS00905 at 191.365 kb on + strand, within HSERO_RS00905 at 191.410 kb on - strand, within HSERO_RS00905 at 191.618 kb on - strand at 191.844 kb on - strand at 191.862 kb on + strand at 192.153 kb on + strand, within HSERO_RS00910 at 192.293 kb on + strand, within HSERO_RS00910 at 192.381 kb on + strand, within HSERO_RS00910 at 192.404 kb on - strand, within HSERO_RS00910 at 192.537 kb on + strand, within HSERO_RS00910 at 192.588 kb on + strand at 192.624 kb on + strand at 192.882 kb on - strand, within HSERO_RS00915
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 187,682 + HSERO_RS00900 0.64 -4.6 188,009 + -0.4 188,045 - -3.5 188,056 + -2.1 188,193 + -5.2 188,334 - -2.1 188,740 + HSERO_RS00905 0.15 -5.3 188,741 + HSERO_RS00905 0.15 -2.6 188,748 - HSERO_RS00905 0.15 -2.7 188,759 - HSERO_RS00905 0.15 -4.7 189,056 + HSERO_RS00905 0.23 -3.1 189,208 + HSERO_RS00905 0.27 -5.2 189,339 + HSERO_RS00905 0.31 -3.3 189,347 - HSERO_RS00905 0.31 -1.3 189,348 + HSERO_RS00905 0.31 -3.5 189,628 - HSERO_RS00905 0.39 -4.3 189,633 - +0.9 189,749 + HSERO_RS00905 0.42 -3.1 189,843 + HSERO_RS00905 0.44 -2.1 189,843 + HSERO_RS00905 0.44 -3.7 189,885 - HSERO_RS00905 0.46 -3.0 189,994 + HSERO_RS00905 0.48 -2.7 190,002 - HSERO_RS00905 0.49 -4.9 190,275 - HSERO_RS00905 0.56 -3.6 190,275 - HSERO_RS00905 0.56 -1.5 190,499 + HSERO_RS00905 0.62 +0.0 190,505 - HSERO_RS00905 0.62 -3.5 190,576 - HSERO_RS00905 0.64 -1.7 190,724 + HSERO_RS00905 0.68 -5.5 191,116 - HSERO_RS00905 0.79 -3.8 191,363 - HSERO_RS00905 0.86 -3.2 191,365 + HSERO_RS00905 0.86 -4.4 191,410 - HSERO_RS00905 0.87 -3.7 191,618 - -1.1 191,844 - -4.6 191,862 + -2.6 192,153 + HSERO_RS00910 0.11 +0.9 192,293 + HSERO_RS00910 0.37 -1.0 192,381 + HSERO_RS00910 0.53 +0.3 192,404 - HSERO_RS00910 0.58 -0.8 192,537 + HSERO_RS00910 0.82 -0.7 192,588 + +1.3 192,624 + +0.2 192,882 - HSERO_RS00915 0.14 -1.8
Or see this region's nucleotide sequence