Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02880 and CCNA_02881 are separated by 150 nucleotides CCNA_02881 and CCNA_02882 are separated by 209 nucleotides CCNA_02882 and CCNA_02883 are separated by 14 nucleotides
CCNA_02880: CCNA_02880 - terminase-like family protein, at 3,027,016 to 3,028,719
_02880
CCNA_02881: CCNA_02881 - oxoglutarate semialdehyde dehydrogenase, at 3,028,870 to 3,030,456
_02881
CCNA_02882: CCNA_02882 - cbb3-type cytochrome C oxidase, subunit III, at 3,030,666 to 3,031,067
_02882
CCNA_02883: CCNA_02883 - flavin containing amine oxidoreductase, at 3,031,082 to 3,032,707
_02883
Position (kb)
3028
3029
3030
3031 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3027.878 kb on + strand, within CCNA_02880 at 3027.880 kb on + strand, within CCNA_02880 at 3027.888 kb on - strand, within CCNA_02880 at 3027.909 kb on - strand, within CCNA_02880 at 3027.910 kb on - strand, within CCNA_02880 at 3027.911 kb on + strand, within CCNA_02880 at 3027.917 kb on + strand, within CCNA_02880 at 3027.936 kb on - strand, within CCNA_02880 at 3027.983 kb on + strand, within CCNA_02880 at 3027.991 kb on - strand, within CCNA_02880 at 3028.032 kb on + strand, within CCNA_02880 at 3028.033 kb on - strand, within CCNA_02880 at 3028.037 kb on + strand, within CCNA_02880 at 3028.040 kb on - strand, within CCNA_02880 at 3028.042 kb on + strand, within CCNA_02880 at 3028.043 kb on + strand, within CCNA_02880 at 3028.047 kb on + strand, within CCNA_02880 at 3028.055 kb on - strand, within CCNA_02880 at 3028.063 kb on + strand, within CCNA_02880 at 3028.063 kb on + strand, within CCNA_02880 at 3028.063 kb on + strand, within CCNA_02880 at 3028.071 kb on - strand at 3028.071 kb on - strand, within CCNA_02880 at 3028.071 kb on - strand, within CCNA_02880 at 3028.097 kb on + strand, within CCNA_02880 at 3028.102 kb on + strand, within CCNA_02880 at 3028.102 kb on + strand, within CCNA_02880 at 3028.110 kb on - strand, within CCNA_02880 at 3028.110 kb on - strand, within CCNA_02880 at 3028.110 kb on - strand, within CCNA_02880 at 3028.110 kb on - strand, within CCNA_02880 at 3028.128 kb on + strand, within CCNA_02880 at 3028.186 kb on + strand, within CCNA_02880 at 3028.194 kb on - strand, within CCNA_02880 at 3028.194 kb on - strand, within CCNA_02880 at 3028.214 kb on - strand, within CCNA_02880 at 3028.241 kb on + strand, within CCNA_02880 at 3028.242 kb on - strand, within CCNA_02880 at 3028.249 kb on - strand, within CCNA_02880 at 3028.249 kb on - strand, within CCNA_02880 at 3028.319 kb on + strand, within CCNA_02880 at 3028.398 kb on + strand, within CCNA_02880 at 3028.434 kb on + strand, within CCNA_02880 at 3028.447 kb on - strand, within CCNA_02880 at 3028.521 kb on - strand, within CCNA_02880 at 3028.537 kb on - strand, within CCNA_02880 at 3028.540 kb on + strand, within CCNA_02880 at 3028.556 kb on + strand at 3028.585 kb on - strand at 3028.699 kb on - strand at 3028.699 kb on - strand at 3028.705 kb on + strand at 3028.713 kb on - strand at 3028.745 kb on - strand at 3028.787 kb on + strand at 3028.791 kb on + strand at 3028.799 kb on - strand at 3028.816 kb on + strand at 3028.829 kb on + strand at 3028.867 kb on + strand at 3028.899 kb on - strand at 3028.940 kb on - strand at 3029.034 kb on - strand, within CCNA_02881 at 3029.042 kb on - strand, within CCNA_02881 at 3029.051 kb on - strand, within CCNA_02881 at 3029.100 kb on + strand, within CCNA_02881 at 3029.147 kb on - strand, within CCNA_02881 at 3029.157 kb on - strand, within CCNA_02881 at 3029.164 kb on + strand, within CCNA_02881 at 3029.191 kb on - strand, within CCNA_02881 at 3029.252 kb on - strand, within CCNA_02881 at 3029.263 kb on - strand, within CCNA_02881 at 3029.278 kb on + strand, within CCNA_02881 at 3029.278 kb on + strand, within CCNA_02881 at 3029.286 kb on - strand, within CCNA_02881 at 3029.288 kb on + strand, within CCNA_02881 at 3029.334 kb on + strand, within CCNA_02881 at 3029.334 kb on + strand, within CCNA_02881 at 3029.455 kb on - strand, within CCNA_02881 at 3029.507 kb on - strand, within CCNA_02881 at 3029.507 kb on - strand, within CCNA_02881 at 3029.534 kb on + strand, within CCNA_02881 at 3029.534 kb on + strand, within CCNA_02881 at 3029.542 kb on - strand, within CCNA_02881 at 3029.546 kb on + strand, within CCNA_02881 at 3029.546 kb on + strand, within CCNA_02881 at 3029.546 kb on + strand, within CCNA_02881 at 3029.579 kb on - strand, within CCNA_02881 at 3029.608 kb on + strand, within CCNA_02881 at 3029.629 kb on + strand, within CCNA_02881 at 3029.629 kb on + strand, within CCNA_02881 at 3029.629 kb on + strand, within CCNA_02881 at 3029.642 kb on - strand, within CCNA_02881 at 3029.642 kb on - strand, within CCNA_02881 at 3029.660 kb on + strand, within CCNA_02881 at 3029.675 kb on - strand, within CCNA_02881 at 3029.683 kb on - strand, within CCNA_02881 at 3029.683 kb on - strand, within CCNA_02881 at 3029.705 kb on + strand, within CCNA_02881 at 3029.731 kb on + strand, within CCNA_02881 at 3029.739 kb on - strand, within CCNA_02881 at 3029.772 kb on + strand, within CCNA_02881 at 3029.780 kb on - strand, within CCNA_02881 at 3029.780 kb on - strand, within CCNA_02881 at 3029.780 kb on - strand, within CCNA_02881 at 3029.791 kb on - strand, within CCNA_02881 at 3029.810 kb on + strand, within CCNA_02881 at 3029.823 kb on - strand, within CCNA_02881 at 3029.848 kb on + strand, within CCNA_02881 at 3029.878 kb on - strand, within CCNA_02881 at 3029.888 kb on - strand, within CCNA_02881 at 3029.914 kb on - strand, within CCNA_02881 at 3029.920 kb on + strand, within CCNA_02881 at 3029.945 kb on + strand, within CCNA_02881 at 3029.945 kb on + strand, within CCNA_02881 at 3029.953 kb on - strand, within CCNA_02881 at 3029.998 kb on + strand, within CCNA_02881 at 3029.998 kb on + strand, within CCNA_02881 at 3030.003 kb on + strand, within CCNA_02881 at 3030.011 kb on - strand, within CCNA_02881 at 3030.011 kb on - strand, within CCNA_02881 at 3030.024 kb on + strand, within CCNA_02881 at 3030.035 kb on + strand, within CCNA_02881 at 3030.053 kb on - strand, within CCNA_02881 at 3030.075 kb on + strand, within CCNA_02881 at 3030.091 kb on + strand, within CCNA_02881 at 3030.091 kb on + strand, within CCNA_02881 at 3030.094 kb on - strand, within CCNA_02881 at 3030.099 kb on - strand, within CCNA_02881 at 3030.132 kb on - strand, within CCNA_02881 at 3030.133 kb on + strand, within CCNA_02881 at 3030.141 kb on - strand, within CCNA_02881 at 3030.156 kb on + strand, within CCNA_02881 at 3030.158 kb on - strand, within CCNA_02881 at 3030.197 kb on - strand, within CCNA_02881 at 3030.215 kb on + strand, within CCNA_02881 at 3030.245 kb on + strand, within CCNA_02881 at 3030.253 kb on - strand, within CCNA_02881 at 3030.256 kb on + strand, within CCNA_02881 at 3030.268 kb on + strand, within CCNA_02881 at 3030.318 kb on - strand at 3030.347 kb on - strand at 3030.377 kb on - strand at 3030.377 kb on - strand at 3030.393 kb on + strand at 3030.401 kb on - strand at 3030.401 kb on - strand at 3030.455 kb on + strand at 3030.464 kb on - strand at 3030.492 kb on - strand at 3030.613 kb on - strand at 3030.672 kb on - strand at 3030.726 kb on - strand, within CCNA_02882 at 3030.738 kb on - strand, within CCNA_02882 at 3030.758 kb on - strand, within CCNA_02882 at 3030.864 kb on - strand, within CCNA_02882 at 3030.885 kb on + strand, within CCNA_02882 at 3030.921 kb on - strand, within CCNA_02882 at 3030.944 kb on - strand, within CCNA_02882 at 3030.952 kb on + strand, within CCNA_02882 at 3030.952 kb on + strand, within CCNA_02882 at 3030.952 kb on + strand, within CCNA_02882 at 3030.960 kb on - strand, within CCNA_02882 at 3030.960 kb on - strand, within CCNA_02882 at 3030.960 kb on - strand, within CCNA_02882 at 3030.960 kb on - strand, within CCNA_02882 at 3030.960 kb on - strand, within CCNA_02882 at 3031.008 kb on + strand, within CCNA_02882 at 3031.008 kb on + strand, within CCNA_02882 at 3031.008 kb on + strand, within CCNA_02882 at 3031.015 kb on - strand, within CCNA_02882 at 3031.016 kb on - strand, within CCNA_02882 at 3031.016 kb on - strand, within CCNA_02882 at 3031.016 kb on - strand, within CCNA_02882 at 3031.016 kb on - strand, within CCNA_02882 at 3031.016 kb on - strand, within CCNA_02882 at 3031.016 kb on - strand, within CCNA_02882 at 3031.028 kb on - strand at 3031.032 kb on + strand at 3031.053 kb on - strand at 3031.075 kb on - strand at 3031.093 kb on + strand at 3031.133 kb on + strand at 3031.152 kb on - strand at 3031.155 kb on - strand at 3031.162 kb on + strand at 3031.181 kb on + strand at 3031.181 kb on + strand at 3031.207 kb on - strand at 3031.215 kb on + strand at 3031.221 kb on - strand at 3031.221 kb on - strand at 3031.221 kb on - strand at 3031.226 kb on - strand at 3031.257 kb on + strand, within CCNA_02883 at 3031.270 kb on - strand, within CCNA_02883 at 3031.270 kb on - strand, within CCNA_02883 at 3031.305 kb on + strand, within CCNA_02883 at 3031.305 kb on + strand, within CCNA_02883 at 3031.313 kb on - strand, within CCNA_02883 at 3031.339 kb on + strand, within CCNA_02883 at 3031.371 kb on - strand, within CCNA_02883 at 3031.396 kb on + strand, within CCNA_02883 at 3031.396 kb on + strand, within CCNA_02883 at 3031.418 kb on + strand, within CCNA_02883 at 3031.438 kb on - strand, within CCNA_02883 at 3031.446 kb on - strand, within CCNA_02883 at 3031.446 kb on - strand, within CCNA_02883
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 3,027,878 + CCNA_02880 0.51 -1.4 3,027,880 + CCNA_02880 0.51 -0.6 3,027,888 - CCNA_02880 0.51 -0.6 3,027,909 - CCNA_02880 0.52 +0.0 3,027,910 - CCNA_02880 0.52 -0.4 3,027,911 + CCNA_02880 0.53 -1.3 3,027,917 + CCNA_02880 0.53 +0.4 3,027,936 - CCNA_02880 0.54 +1.2 3,027,983 + CCNA_02880 0.57 +0.4 3,027,991 - CCNA_02880 0.57 +2.1 3,028,032 + CCNA_02880 0.60 -0.3 3,028,033 - CCNA_02880 0.60 -0.8 3,028,037 + CCNA_02880 0.60 +2.7 3,028,040 - CCNA_02880 0.60 +2.1 3,028,042 + CCNA_02880 0.60 -0.7 3,028,043 + CCNA_02880 0.60 -0.8 3,028,047 + CCNA_02880 0.61 -0.1 3,028,055 - CCNA_02880 0.61 +0.1 3,028,063 + CCNA_02880 0.61 +0.4 3,028,063 + CCNA_02880 0.61 -0.1 3,028,063 + CCNA_02880 0.61 -2.0 3,028,071 - -0.1 3,028,071 - CCNA_02880 0.62 +1.5 3,028,071 - CCNA_02880 0.62 -1.5 3,028,097 + CCNA_02880 0.63 -1.2 3,028,102 + CCNA_02880 0.64 -1.8 3,028,102 + CCNA_02880 0.64 +2.1 3,028,110 - CCNA_02880 0.64 -0.9 3,028,110 - CCNA_02880 0.64 -0.1 3,028,110 - CCNA_02880 0.64 -0.4 3,028,110 - CCNA_02880 0.64 -0.3 3,028,128 + CCNA_02880 0.65 -0.8 3,028,186 + CCNA_02880 0.69 -1.6 3,028,194 - CCNA_02880 0.69 +0.4 3,028,194 - CCNA_02880 0.69 +0.4 3,028,214 - CCNA_02880 0.70 -1.8 3,028,241 + CCNA_02880 0.72 +0.2 3,028,242 - CCNA_02880 0.72 -0.4 3,028,249 - CCNA_02880 0.72 -0.2 3,028,249 - CCNA_02880 0.72 +2.0 3,028,319 + CCNA_02880 0.76 -0.9 3,028,398 + CCNA_02880 0.81 -0.3 3,028,434 + CCNA_02880 0.83 -1.4 3,028,447 - CCNA_02880 0.84 -0.3 3,028,521 - CCNA_02880 0.88 -0.9 3,028,537 - CCNA_02880 0.89 -0.2 3,028,540 + CCNA_02880 0.89 -0.1 3,028,556 + -1.0 3,028,585 - -0.3 3,028,699 - -0.1 3,028,699 - -0.9 3,028,705 + -0.3 3,028,713 - -0.1 3,028,745 - -0.7 3,028,787 + -1.1 3,028,791 + +0.4 3,028,799 - -1.9 3,028,816 + +1.8 3,028,829 + +0.4 3,028,867 + -0.8 3,028,899 - -1.2 3,028,940 - +2.4 3,029,034 - CCNA_02881 0.10 -1.0 3,029,042 - CCNA_02881 0.11 -2.0 3,029,051 - CCNA_02881 0.11 -1.9 3,029,100 + CCNA_02881 0.14 +0.0 3,029,147 - CCNA_02881 0.17 -0.9 3,029,157 - CCNA_02881 0.18 -0.1 3,029,164 + CCNA_02881 0.19 -0.3 3,029,191 - CCNA_02881 0.20 -1.1 3,029,252 - CCNA_02881 0.24 +0.6 3,029,263 - CCNA_02881 0.25 +0.3 3,029,278 + CCNA_02881 0.26 -1.2 3,029,278 + CCNA_02881 0.26 +0.1 3,029,286 - CCNA_02881 0.26 -0.8 3,029,288 + CCNA_02881 0.26 -0.8 3,029,334 + CCNA_02881 0.29 +0.4 3,029,334 + CCNA_02881 0.29 -0.6 3,029,455 - CCNA_02881 0.37 -0.2 3,029,507 - CCNA_02881 0.40 -0.1 3,029,507 - CCNA_02881 0.40 +1.1 3,029,534 + CCNA_02881 0.42 -0.3 3,029,534 + CCNA_02881 0.42 -0.0 3,029,542 - CCNA_02881 0.42 -0.7 3,029,546 + CCNA_02881 0.43 +0.1 3,029,546 + CCNA_02881 0.43 -0.1 3,029,546 + CCNA_02881 0.43 +0.0 3,029,579 - CCNA_02881 0.45 -0.6 3,029,608 + CCNA_02881 0.47 -1.2 3,029,629 + CCNA_02881 0.48 -1.6 3,029,629 + CCNA_02881 0.48 +1.2 3,029,629 + CCNA_02881 0.48 +0.4 3,029,642 - CCNA_02881 0.49 +1.5 3,029,642 - CCNA_02881 0.49 +1.3 3,029,660 + CCNA_02881 0.50 -1.0 3,029,675 - CCNA_02881 0.51 +1.3 3,029,683 - CCNA_02881 0.51 -0.2 3,029,683 - CCNA_02881 0.51 -0.5 3,029,705 + CCNA_02881 0.53 -0.6 3,029,731 + CCNA_02881 0.54 +0.0 3,029,739 - CCNA_02881 0.55 +1.8 3,029,772 + CCNA_02881 0.57 -2.0 3,029,780 - CCNA_02881 0.57 +0.9 3,029,780 - CCNA_02881 0.57 -0.8 3,029,780 - CCNA_02881 0.57 -0.6 3,029,791 - CCNA_02881 0.58 -0.8 3,029,810 + CCNA_02881 0.59 +0.9 3,029,823 - CCNA_02881 0.60 -0.9 3,029,848 + CCNA_02881 0.62 +1.0 3,029,878 - CCNA_02881 0.64 -1.7 3,029,888 - CCNA_02881 0.64 -1.3 3,029,914 - CCNA_02881 0.66 -1.5 3,029,920 + CCNA_02881 0.66 -1.3 3,029,945 + CCNA_02881 0.68 -1.4 3,029,945 + CCNA_02881 0.68 -1.0 3,029,953 - CCNA_02881 0.68 -0.1 3,029,998 + CCNA_02881 0.71 -0.1 3,029,998 + CCNA_02881 0.71 -1.5 3,030,003 + CCNA_02881 0.71 -1.7 3,030,011 - CCNA_02881 0.72 -1.0 3,030,011 - CCNA_02881 0.72 +0.4 3,030,024 + CCNA_02881 0.73 -2.0 3,030,035 + CCNA_02881 0.73 +0.4 3,030,053 - CCNA_02881 0.75 -1.8 3,030,075 + CCNA_02881 0.76 -1.2 3,030,091 + CCNA_02881 0.77 -1.4 3,030,091 + CCNA_02881 0.77 -1.3 3,030,094 - CCNA_02881 0.77 -1.1 3,030,099 - CCNA_02881 0.77 +0.4 3,030,132 - CCNA_02881 0.80 -1.8 3,030,133 + CCNA_02881 0.80 -0.7 3,030,141 - CCNA_02881 0.80 -0.4 3,030,156 + CCNA_02881 0.81 +0.1 3,030,158 - CCNA_02881 0.81 -0.1 3,030,197 - CCNA_02881 0.84 -0.8 3,030,215 + CCNA_02881 0.85 -0.8 3,030,245 + CCNA_02881 0.87 -0.4 3,030,253 - CCNA_02881 0.87 -0.8 3,030,256 + CCNA_02881 0.87 +0.6 3,030,268 + CCNA_02881 0.88 +0.7 3,030,318 - -0.5 3,030,347 - +1.1 3,030,377 - -1.8 3,030,377 - +0.3 3,030,393 + +1.7 3,030,401 - -1.9 3,030,401 - -1.3 3,030,455 + -0.1 3,030,464 - -0.4 3,030,492 - -2.8 3,030,613 - +0.5 3,030,672 - -2.5 3,030,726 - CCNA_02882 0.15 -0.5 3,030,738 - CCNA_02882 0.18 +1.0 3,030,758 - CCNA_02882 0.23 -0.2 3,030,864 - CCNA_02882 0.49 +0.7 3,030,885 + CCNA_02882 0.54 +0.1 3,030,921 - CCNA_02882 0.63 +0.4 3,030,944 - CCNA_02882 0.69 -0.3 3,030,952 + CCNA_02882 0.71 +1.4 3,030,952 + CCNA_02882 0.71 -1.4 3,030,952 + CCNA_02882 0.71 -0.3 3,030,960 - CCNA_02882 0.73 -0.8 3,030,960 - CCNA_02882 0.73 -0.9 3,030,960 - CCNA_02882 0.73 +0.2 3,030,960 - CCNA_02882 0.73 -2.3 3,030,960 - CCNA_02882 0.73 -2.0 3,031,008 + CCNA_02882 0.85 -1.9 3,031,008 + CCNA_02882 0.85 -0.3 3,031,008 + CCNA_02882 0.85 -0.1 3,031,015 - CCNA_02882 0.87 -0.6 3,031,016 - CCNA_02882 0.87 -1.3 3,031,016 - CCNA_02882 0.87 -1.8 3,031,016 - CCNA_02882 0.87 -1.0 3,031,016 - CCNA_02882 0.87 -0.1 3,031,016 - CCNA_02882 0.87 +0.1 3,031,016 - CCNA_02882 0.87 -1.9 3,031,028 - -0.3 3,031,032 + -2.0 3,031,053 - -1.3 3,031,075 - -1.2 3,031,093 + +0.0 3,031,133 + +0.1 3,031,152 - +0.1 3,031,155 - -0.4 3,031,162 + -1.5 3,031,181 + +0.7 3,031,181 + +0.7 3,031,207 - -0.3 3,031,215 + +0.4 3,031,221 - +0.9 3,031,221 - +0.9 3,031,221 - -0.6 3,031,226 - -1.2 3,031,257 + CCNA_02883 0.11 -0.2 3,031,270 - CCNA_02883 0.12 +0.0 3,031,270 - CCNA_02883 0.12 -0.1 3,031,305 + CCNA_02883 0.14 +1.3 3,031,305 + CCNA_02883 0.14 -0.9 3,031,313 - CCNA_02883 0.14 -0.5 3,031,339 + CCNA_02883 0.16 +1.6 3,031,371 - CCNA_02883 0.18 -0.1 3,031,396 + CCNA_02883 0.19 -0.3 3,031,396 + CCNA_02883 0.19 -1.4 3,031,418 + CCNA_02883 0.21 -1.0 3,031,438 - CCNA_02883 0.22 -2.5 3,031,446 - CCNA_02883 0.22 -0.6 3,031,446 - CCNA_02883 0.22 -0.3
Or see this region's nucleotide sequence