Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02821

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02820 and CCNA_02821 are separated by 223 nucleotidesCCNA_02821 and CCNA_02822 overlap by 4 nucleotidesCCNA_02822 and CCNA_03978 are separated by 6 nucleotides CCNA_02820: CCNA_02820 - TadG-family protein, at 2,975,365 to 2,977,254 _02820 CCNA_02821: CCNA_02821 - hipA-related phosphatidylinositol 3/4-kinase, at 2,977,478 to 2,978,812 _02821 CCNA_02822: CCNA_02822 - MerR-family transcriptional regulator, at 2,978,809 to 2,979,663 _02822 CCNA_03978: CCNA_03978 - hypothetical protein, at 2,979,670 to 2,979,816 _03978 CCNA_03979: CCNA_03979 - hypothetical protein, at 2,979,690 to 2,979,911 _03979 Position (kb) 2977 2978 2979Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2976.499 kb on - strand, within CCNA_02820at 2976.503 kb on + strand, within CCNA_02820at 2976.515 kb on + strand, within CCNA_02820at 2976.523 kb on - strand, within CCNA_02820at 2976.528 kb on - strand, within CCNA_02820at 2976.535 kb on + strand, within CCNA_02820at 2976.538 kb on - strand, within CCNA_02820at 2976.538 kb on - strand, within CCNA_02820at 2976.543 kb on - strand, within CCNA_02820at 2976.588 kb on - strand, within CCNA_02820at 2976.588 kb on - strand, within CCNA_02820at 2976.603 kb on + strand, within CCNA_02820at 2976.607 kb on - strand, within CCNA_02820at 2976.615 kb on + strand, within CCNA_02820at 2976.615 kb on + strand, within CCNA_02820at 2976.615 kb on + strand, within CCNA_02820at 2976.623 kb on - strand, within CCNA_02820at 2976.629 kb on - strand, within CCNA_02820at 2976.631 kb on + strand, within CCNA_02820at 2976.633 kb on + strand, within CCNA_02820at 2976.638 kb on + strand, within CCNA_02820at 2976.639 kb on - strand, within CCNA_02820at 2976.675 kb on + strand, within CCNA_02820at 2976.681 kb on + strand, within CCNA_02820at 2976.745 kb on - strand, within CCNA_02820at 2976.790 kb on + strand, within CCNA_02820at 2976.798 kb on - strand, within CCNA_02820at 2976.799 kb on + strand, within CCNA_02820at 2976.804 kb on + strand, within CCNA_02820at 2976.804 kb on + strand, within CCNA_02820at 2976.805 kb on + strand, within CCNA_02820at 2976.816 kb on + strand, within CCNA_02820at 2976.816 kb on + strand, within CCNA_02820at 2976.823 kb on - strand, within CCNA_02820at 2976.824 kb on - strand, within CCNA_02820at 2976.824 kb on - strand, within CCNA_02820at 2976.833 kb on + strand, within CCNA_02820at 2976.845 kb on - strand, within CCNA_02820at 2976.925 kb on + strand, within CCNA_02820at 2976.927 kb on + strand, within CCNA_02820at 2976.927 kb on + strand, within CCNA_02820at 2976.933 kb on - strand, within CCNA_02820at 2976.942 kb on + strand, within CCNA_02820at 2976.944 kb on + strand, within CCNA_02820at 2977.004 kb on + strand, within CCNA_02820at 2977.038 kb on + strand, within CCNA_02820at 2977.050 kb on + strand, within CCNA_02820at 2977.059 kb on + strand, within CCNA_02820at 2977.086 kb on + strandat 2977.087 kb on - strandat 2977.094 kb on - strandat 2977.100 kb on + strandat 2977.106 kb on + strandat 2977.111 kb on + strandat 2977.116 kb on + strandat 2977.119 kb on - strandat 2977.124 kb on - strandat 2977.124 kb on - strandat 2977.124 kb on - strandat 2977.126 kb on + strandat 2977.126 kb on + strandat 2977.134 kb on - strandat 2977.134 kb on - strandat 2977.134 kb on - strandat 2977.134 kb on - strandat 2977.160 kb on + strandat 2977.160 kb on + strandat 2977.160 kb on + strandat 2977.168 kb on - strandat 2977.168 kb on - strandat 2977.187 kb on + strandat 2977.187 kb on + strandat 2977.187 kb on + strandat 2977.187 kb on + strandat 2977.192 kb on + strandat 2977.195 kb on - strandat 2977.213 kb on - strandat 2977.245 kb on - strandat 2977.259 kb on + strandat 2977.288 kb on + strandat 2977.288 kb on + strandat 2977.293 kb on + strandat 2977.293 kb on + strandat 2977.296 kb on - strandat 2977.296 kb on - strandat 2977.301 kb on - strandat 2977.301 kb on - strandat 2977.306 kb on - strandat 2977.306 kb on - strandat 2977.340 kb on - strandat 2977.345 kb on - strandat 2977.362 kb on + strandat 2977.432 kb on + strandat 2977.462 kb on - strandat 2977.474 kb on - strandat 2977.474 kb on - strandat 2977.476 kb on + strandat 2977.494 kb on - strandat 2977.504 kb on + strandat 2977.517 kb on - strandat 2977.523 kb on + strandat 2977.529 kb on + strandat 2977.537 kb on + strandat 2977.538 kb on + strandat 2977.541 kb on - strandat 2977.604 kb on - strandat 2977.619 kb on + strand, within CCNA_02821at 2977.619 kb on + strand, within CCNA_02821at 2977.619 kb on + strand, within CCNA_02821at 2977.619 kb on + strand, within CCNA_02821at 2977.619 kb on + strand, within CCNA_02821at 2977.619 kb on + strand, within CCNA_02821at 2977.619 kb on + strand, within CCNA_02821at 2977.627 kb on - strand, within CCNA_02821at 2977.627 kb on - strand, within CCNA_02821at 2977.627 kb on - strand, within CCNA_02821at 2977.627 kb on - strand, within CCNA_02821at 2977.633 kb on + strand, within CCNA_02821at 2977.634 kb on + strand, within CCNA_02821at 2977.748 kb on + strand, within CCNA_02821at 2977.811 kb on + strand, within CCNA_02821at 2977.811 kb on + strand, within CCNA_02821at 2977.819 kb on - strand, within CCNA_02821at 2977.936 kb on - strand, within CCNA_02821at 2977.936 kb on - strand, within CCNA_02821at 2977.938 kb on + strand, within CCNA_02821at 2977.966 kb on + strand, within CCNA_02821at 2977.974 kb on - strand, within CCNA_02821at 2977.974 kb on - strand, within CCNA_02821at 2977.974 kb on - strand, within CCNA_02821at 2977.974 kb on - strand, within CCNA_02821at 2977.974 kb on - strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.016 kb on + strand, within CCNA_02821at 2978.024 kb on - strand, within CCNA_02821at 2978.024 kb on - strand, within CCNA_02821at 2978.048 kb on + strand, within CCNA_02821at 2978.049 kb on + strand, within CCNA_02821at 2978.049 kb on + strand, within CCNA_02821at 2978.057 kb on - strand, within CCNA_02821at 2978.057 kb on - strand, within CCNA_02821at 2978.057 kb on - strand, within CCNA_02821at 2978.057 kb on - strand, within CCNA_02821at 2978.057 kb on - strand, within CCNA_02821at 2978.096 kb on + strand, within CCNA_02821at 2978.104 kb on - strand, within CCNA_02821at 2978.179 kb on + strand, within CCNA_02821at 2978.179 kb on + strand, within CCNA_02821at 2978.195 kb on - strand, within CCNA_02821at 2978.236 kb on + strand, within CCNA_02821at 2978.249 kb on - strand, within CCNA_02821at 2978.259 kb on - strand, within CCNA_02821at 2978.259 kb on - strand, within CCNA_02821at 2978.259 kb on - strand, within CCNA_02821at 2978.286 kb on + strand, within CCNA_02821at 2978.286 kb on + strand, within CCNA_02821at 2978.286 kb on + strand, within CCNA_02821at 2978.294 kb on - strand, within CCNA_02821at 2978.303 kb on + strand, within CCNA_02821at 2978.303 kb on + strand, within CCNA_02821at 2978.303 kb on + strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.311 kb on - strand, within CCNA_02821at 2978.312 kb on + strand, within CCNA_02821at 2978.316 kb on - strand, within CCNA_02821at 2978.318 kb on + strand, within CCNA_02821at 2978.318 kb on + strand, within CCNA_02821at 2978.318 kb on + strandat 2978.321 kb on - strand, within CCNA_02821at 2978.321 kb on - strand, within CCNA_02821at 2978.331 kb on - strand, within CCNA_02821at 2978.338 kb on + strand, within CCNA_02821at 2978.359 kb on + strand, within CCNA_02821at 2978.362 kb on + strandat 2978.380 kb on - strand, within CCNA_02821at 2978.381 kb on - strandat 2978.389 kb on - strand, within CCNA_02821at 2978.471 kb on + strand, within CCNA_02821at 2978.514 kb on - strand, within CCNA_02821at 2978.514 kb on - strand, within CCNA_02821at 2978.516 kb on - strand, within CCNA_02821at 2978.528 kb on - strand, within CCNA_02821at 2978.529 kb on + strand, within CCNA_02821at 2978.537 kb on - strand, within CCNA_02821at 2978.537 kb on - strand, within CCNA_02821at 2978.538 kb on - strand, within CCNA_02821at 2978.632 kb on - strand, within CCNA_02821at 2978.649 kb on - strand, within CCNA_02821at 2978.664 kb on + strand, within CCNA_02821at 2978.664 kb on + strand, within CCNA_02821at 2978.675 kb on + strand, within CCNA_02821at 2978.690 kb on + strandat 2978.708 kb on - strandat 2978.761 kb on - strandat 2978.767 kb on + strandat 2978.767 kb on + strandat 2978.775 kb on - strandat 2978.775 kb on - strandat 2978.775 kb on - strandat 2978.775 kb on - strandat 2978.775 kb on - strandat 2978.789 kb on + strandat 2978.810 kb on + strandat 2978.810 kb on + strandat 2978.810 kb on + strandat 2978.810 kb on + strandat 2978.818 kb on - strandat 2978.818 kb on - strandat 2978.818 kb on - strandat 2978.818 kb on - strandat 2979.581 kb on - strandat 2979.589 kb on - strandat 2979.589 kb on - strandat 2979.798 kb on + strandat 2979.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,976,499 - CCNA_02820 0.60 -1.8
2,976,503 + CCNA_02820 0.60 -2.3
2,976,515 + CCNA_02820 0.61 -1.6
2,976,523 - CCNA_02820 0.61 -2.9
2,976,528 - CCNA_02820 0.62 -1.3
2,976,535 + CCNA_02820 0.62 -0.8
2,976,538 - CCNA_02820 0.62 -1.2
2,976,538 - CCNA_02820 0.62 -1.2
2,976,543 - CCNA_02820 0.62 -0.6
2,976,588 - CCNA_02820 0.65 +0.5
2,976,588 - CCNA_02820 0.65 -1.6
2,976,603 + CCNA_02820 0.66 -0.8
2,976,607 - CCNA_02820 0.66 -1.8
2,976,615 + CCNA_02820 0.66 -1.3
2,976,615 + CCNA_02820 0.66 -0.7
2,976,615 + CCNA_02820 0.66 -3.7
2,976,623 - CCNA_02820 0.67 +0.1
2,976,629 - CCNA_02820 0.67 -0.9
2,976,631 + CCNA_02820 0.67 -3.0
2,976,633 + CCNA_02820 0.67 -1.9
2,976,638 + CCNA_02820 0.67 -1.9
2,976,639 - CCNA_02820 0.67 +0.5
2,976,675 + CCNA_02820 0.69 -1.2
2,976,681 + CCNA_02820 0.70 +1.3
2,976,745 - CCNA_02820 0.73 +0.4
2,976,790 + CCNA_02820 0.75 +1.2
2,976,798 - CCNA_02820 0.76 -0.7
2,976,799 + CCNA_02820 0.76 +0.3
2,976,804 + CCNA_02820 0.76 -1.2
2,976,804 + CCNA_02820 0.76 +0.2
2,976,805 + CCNA_02820 0.76 -0.4
2,976,816 + CCNA_02820 0.77 -0.9
2,976,816 + CCNA_02820 0.77 -0.5
2,976,823 - CCNA_02820 0.77 +0.2
2,976,824 - CCNA_02820 0.77 +0.8
2,976,824 - CCNA_02820 0.77 -1.1
2,976,833 + CCNA_02820 0.78 -2.6
2,976,845 - CCNA_02820 0.78 -0.4
2,976,925 + CCNA_02820 0.83 -0.5
2,976,927 + CCNA_02820 0.83 -1.8
2,976,927 + CCNA_02820 0.83 -1.4
2,976,933 - CCNA_02820 0.83 -1.1
2,976,942 + CCNA_02820 0.83 -0.1
2,976,944 + CCNA_02820 0.84 -1.9
2,977,004 + CCNA_02820 0.87 -1.3
2,977,038 + CCNA_02820 0.89 -0.0
2,977,050 + CCNA_02820 0.89 -0.3
2,977,059 + CCNA_02820 0.90 -1.1
2,977,086 + -0.5
2,977,087 - -0.3
2,977,094 - -1.8
2,977,100 + -0.6
2,977,106 + -0.5
2,977,111 + -3.0
2,977,116 + +0.1
2,977,119 - -0.2
2,977,124 - +1.0
2,977,124 - +0.4
2,977,124 - +0.6
2,977,126 + -1.8
2,977,126 + -0.1
2,977,134 - -1.6
2,977,134 - -1.5
2,977,134 - -1.0
2,977,134 - +0.2
2,977,160 + +0.4
2,977,160 + -1.0
2,977,160 + +0.4
2,977,168 - -0.7
2,977,168 - +0.2
2,977,187 + -0.5
2,977,187 + -1.6
2,977,187 + -0.9
2,977,187 + -0.8
2,977,192 + -1.2
2,977,195 - -3.4
2,977,213 - -2.5
2,977,245 - -0.8
2,977,259 + -1.1
2,977,288 + +1.7
2,977,288 + -2.5
2,977,293 + -1.1
2,977,293 + -2.5
2,977,296 - +0.5
2,977,296 - +0.9
2,977,301 - +1.9
2,977,301 - +0.3
2,977,306 - -1.6
2,977,306 - -0.3
2,977,340 - +1.1
2,977,345 - +1.4
2,977,362 + +1.9
2,977,432 + -0.1
2,977,462 - -0.5
2,977,474 - -1.1
2,977,474 - -0.2
2,977,476 + -1.3
2,977,494 - -1.5
2,977,504 + -1.5
2,977,517 - -0.3
2,977,523 + -1.5
2,977,529 + +1.2
2,977,537 + -1.9
2,977,538 + -2.6
2,977,541 - +0.2
2,977,604 - -0.3
2,977,619 + CCNA_02821 0.11 -2.6
2,977,619 + CCNA_02821 0.11 -0.6
2,977,619 + CCNA_02821 0.11 -1.0
2,977,619 + CCNA_02821 0.11 -0.0
2,977,619 + CCNA_02821 0.11 -0.3
2,977,619 + CCNA_02821 0.11 -1.6
2,977,619 + CCNA_02821 0.11 -0.1
2,977,627 - CCNA_02821 0.11 +0.8
2,977,627 - CCNA_02821 0.11 +1.3
2,977,627 - CCNA_02821 0.11 +1.5
2,977,627 - CCNA_02821 0.11 +1.0
2,977,633 + CCNA_02821 0.12 -1.8
2,977,634 + CCNA_02821 0.12 -1.0
2,977,748 + CCNA_02821 0.20 -1.1
2,977,811 + CCNA_02821 0.25 -0.5
2,977,811 + CCNA_02821 0.25 -2.6
2,977,819 - CCNA_02821 0.26 +2.2
2,977,936 - CCNA_02821 0.34 -1.3
2,977,936 - CCNA_02821 0.34 +0.7
2,977,938 + CCNA_02821 0.34 +1.4
2,977,966 + CCNA_02821 0.37 -1.4
2,977,974 - CCNA_02821 0.37 +1.8
2,977,974 - CCNA_02821 0.37 +1.0
2,977,974 - CCNA_02821 0.37 -0.4
2,977,974 - CCNA_02821 0.37 +1.0
2,977,974 - CCNA_02821 0.37 +1.3
2,978,016 + CCNA_02821 0.40 -1.5
2,978,016 + CCNA_02821 0.40 +0.7
2,978,016 + CCNA_02821 0.40 +0.9
2,978,016 + CCNA_02821 0.40 -1.0
2,978,016 + CCNA_02821 0.40 +1.1
2,978,016 + CCNA_02821 0.40 -1.0
2,978,016 + CCNA_02821 0.40 -1.1
2,978,024 - CCNA_02821 0.41 +1.5
2,978,024 - CCNA_02821 0.41 +1.0
2,978,048 + CCNA_02821 0.43 -1.1
2,978,049 + CCNA_02821 0.43 -1.1
2,978,049 + CCNA_02821 0.43 -1.0
2,978,057 - CCNA_02821 0.43 +1.3
2,978,057 - CCNA_02821 0.43 +2.4
2,978,057 - CCNA_02821 0.43 +0.9
2,978,057 - CCNA_02821 0.43 +1.0
2,978,057 - CCNA_02821 0.43 +1.5
2,978,096 + CCNA_02821 0.46 -2.5
2,978,104 - CCNA_02821 0.47 +1.2
2,978,179 + CCNA_02821 0.53 +0.4
2,978,179 + CCNA_02821 0.53 -0.6
2,978,195 - CCNA_02821 0.54 +0.7
2,978,236 + CCNA_02821 0.57 -1.3
2,978,249 - CCNA_02821 0.58 +1.1
2,978,259 - CCNA_02821 0.59 +0.8
2,978,259 - CCNA_02821 0.59 +1.2
2,978,259 - CCNA_02821 0.59 +1.0
2,978,286 + CCNA_02821 0.61 -0.5
2,978,286 + CCNA_02821 0.61 +1.1
2,978,286 + CCNA_02821 0.61 -2.5
2,978,294 - CCNA_02821 0.61 +0.4
2,978,303 + CCNA_02821 0.62 -1.8
2,978,303 + CCNA_02821 0.62 -2.5
2,978,303 + CCNA_02821 0.62 -2.6
2,978,311 - CCNA_02821 0.62 +0.7
2,978,311 - CCNA_02821 0.62 +1.8
2,978,311 - CCNA_02821 0.62 +1.0
2,978,311 - CCNA_02821 0.62 -0.6
2,978,311 - CCNA_02821 0.62 +1.1
2,978,311 - CCNA_02821 0.62 +0.8
2,978,311 - CCNA_02821 0.62 +0.3
2,978,312 + CCNA_02821 0.62 -2.0
2,978,316 - CCNA_02821 0.63 +2.0
2,978,318 + CCNA_02821 0.63 -1.6
2,978,318 + CCNA_02821 0.63 +0.0
2,978,318 + -0.5
2,978,321 - CCNA_02821 0.63 +1.0
2,978,321 - CCNA_02821 0.63 +0.2
2,978,331 - CCNA_02821 0.64 +1.1
2,978,338 + CCNA_02821 0.64 +0.4
2,978,359 + CCNA_02821 0.66 -1.8
2,978,362 + +0.7
2,978,380 - CCNA_02821 0.68 +2.2
2,978,381 - +2.7
2,978,389 - CCNA_02821 0.68 +1.1
2,978,471 + CCNA_02821 0.74 -1.4
2,978,514 - CCNA_02821 0.78 +1.6
2,978,514 - CCNA_02821 0.78 +2.0
2,978,516 - CCNA_02821 0.78 +1.0
2,978,528 - CCNA_02821 0.79 +0.6
2,978,529 + CCNA_02821 0.79 -2.3
2,978,537 - CCNA_02821 0.79 +2.4
2,978,537 - CCNA_02821 0.79 +0.8
2,978,538 - CCNA_02821 0.79 -0.1
2,978,632 - CCNA_02821 0.86 +2.3
2,978,649 - CCNA_02821 0.88 +1.0
2,978,664 + CCNA_02821 0.89 +0.4
2,978,664 + CCNA_02821 0.89 -0.4
2,978,675 + CCNA_02821 0.90 -0.2
2,978,690 + -1.2
2,978,708 - +1.2
2,978,761 - +1.4
2,978,767 + -1.2
2,978,767 + -2.0
2,978,775 - +1.9
2,978,775 - +0.7
2,978,775 - +0.4
2,978,775 - +0.7
2,978,775 - +1.0
2,978,789 + +0.1
2,978,810 + -1.6
2,978,810 + -0.8
2,978,810 + -1.5
2,978,810 + -1.4
2,978,818 - +0.4
2,978,818 - +0.6
2,978,818 - +1.0
2,978,818 - +0.8
2,979,581 - -0.8
2,979,589 - -2.2
2,979,589 - +0.0
2,979,798 + +2.2
2,979,811 + -1.6

Or see this region's nucleotide sequence