Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02481 and CCNA_02482 are separated by 124 nucleotides CCNA_02482 and CCNA_02483 are separated by 49 nucleotides
CCNA_02481: CCNA_02481 - TonB-dependent receptor, at 2,626,536 to 2,629,109
_02481
CCNA_02482: CCNA_02482 - AraC-family transcriptional regulator, at 2,629,234 to 2,630,172
_02482
CCNA_02483: CCNA_02483 - 4-coumarate--CoA ligase, at 2,630,222 to 2,631,712
_02483
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2628.248 kb on + strand, within CCNA_02481 at 2628.274 kb on + strand, within CCNA_02481 at 2628.274 kb on + strand, within CCNA_02481 at 2628.279 kb on + strand, within CCNA_02481 at 2628.282 kb on - strand, within CCNA_02481 at 2628.282 kb on - strand, within CCNA_02481 at 2628.282 kb on - strand, within CCNA_02481 at 2628.282 kb on - strand, within CCNA_02481 at 2628.318 kb on + strand, within CCNA_02481 at 2628.325 kb on + strand, within CCNA_02481 at 2628.325 kb on + strand, within CCNA_02481 at 2628.325 kb on + strand, within CCNA_02481 at 2628.333 kb on - strand, within CCNA_02481 at 2628.333 kb on - strand, within CCNA_02481 at 2628.333 kb on - strand, within CCNA_02481 at 2628.333 kb on - strand, within CCNA_02481 at 2628.333 kb on - strand, within CCNA_02481 at 2628.352 kb on + strand, within CCNA_02481 at 2628.365 kb on + strand, within CCNA_02481 at 2628.373 kb on - strand, within CCNA_02481 at 2628.383 kb on - strand, within CCNA_02481 at 2628.402 kb on + strand, within CCNA_02481 at 2628.425 kb on - strand, within CCNA_02481 at 2628.427 kb on + strand, within CCNA_02481 at 2628.455 kb on + strand, within CCNA_02481 at 2628.478 kb on + strand, within CCNA_02481 at 2628.484 kb on - strand, within CCNA_02481 at 2628.486 kb on - strand, within CCNA_02481 at 2628.540 kb on - strand at 2628.542 kb on + strand, within CCNA_02481 at 2628.547 kb on + strand, within CCNA_02481 at 2628.603 kb on - strand, within CCNA_02481 at 2628.711 kb on + strand, within CCNA_02481 at 2628.717 kb on - strand, within CCNA_02481 at 2628.720 kb on + strand, within CCNA_02481 at 2628.749 kb on + strand, within CCNA_02481 at 2628.784 kb on - strand, within CCNA_02481 at 2628.811 kb on - strand, within CCNA_02481 at 2628.824 kb on + strand, within CCNA_02481 at 2628.826 kb on + strand, within CCNA_02481 at 2628.844 kb on - strand, within CCNA_02481 at 2628.888 kb on - strand at 2628.894 kb on + strand at 2628.900 kb on + strand at 2628.903 kb on - strand at 2628.910 kb on + strand at 2628.927 kb on + strand at 2628.935 kb on - strand at 2628.972 kb on + strand at 2629.001 kb on - strand at 2629.003 kb on + strand at 2629.028 kb on + strand at 2629.056 kb on + strand at 2629.075 kb on + strand at 2629.083 kb on - strand at 2629.104 kb on - strand at 2629.111 kb on + strand at 2629.119 kb on - strand at 2629.139 kb on + strand at 2629.224 kb on + strand at 2629.238 kb on - strand at 2629.238 kb on - strand at 2629.249 kb on - strand at 2629.257 kb on + strand at 2629.265 kb on + strand at 2629.311 kb on + strand at 2629.319 kb on - strand at 2629.319 kb on - strand at 2629.332 kb on - strand, within CCNA_02482 at 2629.337 kb on - strand, within CCNA_02482 at 2629.353 kb on - strand, within CCNA_02482 at 2629.359 kb on + strand, within CCNA_02482 at 2629.374 kb on - strand, within CCNA_02482 at 2629.408 kb on - strand, within CCNA_02482 at 2629.438 kb on + strand, within CCNA_02482 at 2629.446 kb on - strand, within CCNA_02482 at 2629.487 kb on + strand, within CCNA_02482 at 2629.494 kb on + strand, within CCNA_02482 at 2629.494 kb on + strand, within CCNA_02482 at 2629.502 kb on - strand, within CCNA_02482 at 2629.539 kb on + strand, within CCNA_02482 at 2629.585 kb on + strand, within CCNA_02482 at 2629.594 kb on + strand, within CCNA_02482 at 2629.594 kb on - strand, within CCNA_02482 at 2629.609 kb on + strand, within CCNA_02482 at 2629.618 kb on + strand, within CCNA_02482 at 2629.618 kb on + strand, within CCNA_02482 at 2629.618 kb on + strand, within CCNA_02482 at 2629.618 kb on + strand, within CCNA_02482 at 2629.618 kb on + strand, within CCNA_02482 at 2629.625 kb on + strand, within CCNA_02482 at 2629.626 kb on - strand, within CCNA_02482 at 2629.630 kb on + strand, within CCNA_02482 at 2629.638 kb on - strand, within CCNA_02482 at 2629.638 kb on - strand, within CCNA_02482 at 2629.690 kb on + strand, within CCNA_02482 at 2629.691 kb on - strand, within CCNA_02482 at 2629.787 kb on + strand, within CCNA_02482 at 2629.800 kb on + strand, within CCNA_02482 at 2629.800 kb on + strand, within CCNA_02482 at 2629.813 kb on - strand, within CCNA_02482 at 2629.835 kb on + strand, within CCNA_02482 at 2629.835 kb on + strand, within CCNA_02482 at 2629.835 kb on + strand, within CCNA_02482 at 2629.835 kb on + strand, within CCNA_02482 at 2629.835 kb on + strand, within CCNA_02482 at 2629.843 kb on - strand, within CCNA_02482 at 2629.843 kb on - strand, within CCNA_02482 at 2629.843 kb on - strand, within CCNA_02482 at 2629.860 kb on + strand, within CCNA_02482 at 2629.861 kb on + strand, within CCNA_02482 at 2629.868 kb on - strand, within CCNA_02482 at 2629.874 kb on - strand, within CCNA_02482 at 2629.876 kb on + strand, within CCNA_02482 at 2629.884 kb on - strand, within CCNA_02482 at 2629.887 kb on + strand, within CCNA_02482 at 2629.895 kb on - strand, within CCNA_02482 at 2629.899 kb on + strand, within CCNA_02482 at 2629.938 kb on + strand, within CCNA_02482 at 2629.946 kb on - strand, within CCNA_02482 at 2630.008 kb on + strand, within CCNA_02482 at 2630.008 kb on + strand, within CCNA_02482 at 2630.013 kb on + strand, within CCNA_02482 at 2630.013 kb on + strand, within CCNA_02482 at 2630.016 kb on - strand, within CCNA_02482 at 2630.016 kb on - strand, within CCNA_02482 at 2630.016 kb on - strand, within CCNA_02482 at 2630.016 kb on - strand, within CCNA_02482 at 2630.016 kb on - strand, within CCNA_02482 at 2630.037 kb on + strand, within CCNA_02482 at 2630.037 kb on + strand, within CCNA_02482 at 2630.037 kb on + strand, within CCNA_02482 at 2630.037 kb on + strand, within CCNA_02482 at 2630.037 kb on + strand, within CCNA_02482 at 2630.037 kb on + strand, within CCNA_02482 at 2630.045 kb on - strand, within CCNA_02482 at 2630.045 kb on - strand, within CCNA_02482 at 2630.045 kb on - strand, within CCNA_02482 at 2630.045 kb on - strand, within CCNA_02482 at 2630.045 kb on - strand, within CCNA_02482 at 2630.047 kb on + strand, within CCNA_02482 at 2630.142 kb on - strand at 2630.148 kb on - strand at 2630.161 kb on + strand at 2630.181 kb on + strand at 2630.202 kb on + strand at 2630.204 kb on + strand at 2630.204 kb on + strand at 2630.287 kb on - strand at 2630.311 kb on + strand at 2630.312 kb on + strand at 2630.312 kb on + strand at 2630.319 kb on + strand at 2630.320 kb on - strand at 2630.327 kb on - strand at 2630.327 kb on - strand at 2630.327 kb on - strand at 2630.329 kb on + strand at 2630.329 kb on + strand at 2630.337 kb on - strand at 2630.337 kb on - strand at 2630.355 kb on + strand at 2630.359 kb on + strand at 2630.377 kb on + strand, within CCNA_02483 at 2630.403 kb on + strand, within CCNA_02483 at 2630.419 kb on - strand, within CCNA_02483 at 2630.508 kb on + strand, within CCNA_02483 at 2630.516 kb on - strand, within CCNA_02483 at 2630.560 kb on + strand, within CCNA_02483 at 2630.564 kb on + strand, within CCNA_02483 at 2630.585 kb on - strand, within CCNA_02483 at 2630.770 kb on - strand, within CCNA_02483 at 2630.770 kb on - strand, within CCNA_02483 at 2630.792 kb on + strand, within CCNA_02483 at 2630.797 kb on + strand, within CCNA_02483 at 2630.834 kb on - strand, within CCNA_02483 at 2630.842 kb on + strand, within CCNA_02483 at 2630.842 kb on + strand, within CCNA_02483 at 2630.860 kb on + strand, within CCNA_02483 at 2630.882 kb on + strand, within CCNA_02483 at 2630.937 kb on + strand, within CCNA_02483 at 2630.968 kb on + strand, within CCNA_02483 at 2630.977 kb on + strand, within CCNA_02483 at 2630.985 kb on - strand, within CCNA_02483 at 2630.995 kb on - strand, within CCNA_02483 at 2631.000 kb on + strand, within CCNA_02483 at 2631.040 kb on + strand, within CCNA_02483 at 2631.057 kb on + strand, within CCNA_02483 at 2631.065 kb on - strand, within CCNA_02483 at 2631.066 kb on - strand, within CCNA_02483 at 2631.084 kb on + strand, within CCNA_02483 at 2631.095 kb on + strand, within CCNA_02483 at 2631.095 kb on + strand, within CCNA_02483 at 2631.095 kb on + strand, within CCNA_02483 at 2631.103 kb on - strand, within CCNA_02483 at 2631.114 kb on + strand, within CCNA_02483 at 2631.122 kb on - strand, within CCNA_02483
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 2,628,248 + CCNA_02481 0.67 -0.3 2,628,274 + CCNA_02481 0.68 -1.9 2,628,274 + CCNA_02481 0.68 -1.6 2,628,279 + CCNA_02481 0.68 -0.5 2,628,282 - CCNA_02481 0.68 +0.9 2,628,282 - CCNA_02481 0.68 +0.5 2,628,282 - CCNA_02481 0.68 -0.9 2,628,282 - CCNA_02481 0.68 -0.5 2,628,318 + CCNA_02481 0.69 -1.9 2,628,325 + CCNA_02481 0.70 -0.9 2,628,325 + CCNA_02481 0.70 -1.1 2,628,325 + CCNA_02481 0.70 -1.1 2,628,333 - CCNA_02481 0.70 -1.8 2,628,333 - CCNA_02481 0.70 -1.8 2,628,333 - CCNA_02481 0.70 -1.6 2,628,333 - CCNA_02481 0.70 -1.4 2,628,333 - CCNA_02481 0.70 +0.8 2,628,352 + CCNA_02481 0.71 -1.7 2,628,365 + CCNA_02481 0.71 +0.5 2,628,373 - CCNA_02481 0.71 -2.5 2,628,383 - CCNA_02481 0.72 -1.3 2,628,402 + CCNA_02481 0.72 -1.7 2,628,425 - CCNA_02481 0.73 -1.3 2,628,427 + CCNA_02481 0.73 -1.4 2,628,455 + CCNA_02481 0.75 +0.4 2,628,478 + CCNA_02481 0.75 -1.6 2,628,484 - CCNA_02481 0.76 +0.1 2,628,486 - CCNA_02481 0.76 -0.9 2,628,540 - +1.5 2,628,542 + CCNA_02481 0.78 -2.1 2,628,547 + CCNA_02481 0.78 -0.8 2,628,603 - CCNA_02481 0.80 -2.8 2,628,711 + CCNA_02481 0.84 -1.9 2,628,717 - CCNA_02481 0.85 -2.5 2,628,720 + CCNA_02481 0.85 -1.4 2,628,749 + CCNA_02481 0.86 -1.3 2,628,784 - CCNA_02481 0.87 -1.9 2,628,811 - CCNA_02481 0.88 -1.5 2,628,824 + CCNA_02481 0.89 -1.7 2,628,826 + CCNA_02481 0.89 +0.3 2,628,844 - CCNA_02481 0.90 -1.3 2,628,888 - -0.8 2,628,894 + -1.5 2,628,900 + +0.9 2,628,903 - -2.4 2,628,910 + -0.6 2,628,927 + -0.7 2,628,935 - +0.2 2,628,972 + -1.0 2,629,001 - -3.8 2,629,003 + -1.0 2,629,028 + -1.7 2,629,056 + -2.0 2,629,075 + +0.3 2,629,083 - -2.7 2,629,104 - -2.7 2,629,111 + -2.5 2,629,119 - +0.0 2,629,139 + +0.8 2,629,224 + +0.5 2,629,238 - -0.8 2,629,238 - -0.2 2,629,249 - -3.0 2,629,257 + -0.6 2,629,265 + -1.1 2,629,311 + +1.9 2,629,319 - -1.7 2,629,319 - -1.1 2,629,332 - CCNA_02482 0.10 +0.7 2,629,337 - CCNA_02482 0.11 -0.8 2,629,353 - CCNA_02482 0.13 -2.0 2,629,359 + CCNA_02482 0.13 -1.1 2,629,374 - CCNA_02482 0.15 -0.9 2,629,408 - CCNA_02482 0.19 -2.5 2,629,438 + CCNA_02482 0.22 -1.8 2,629,446 - CCNA_02482 0.23 -2.0 2,629,487 + CCNA_02482 0.27 -2.8 2,629,494 + CCNA_02482 0.28 +0.0 2,629,494 + CCNA_02482 0.28 +1.5 2,629,502 - CCNA_02482 0.29 -3.1 2,629,539 + CCNA_02482 0.32 -0.2 2,629,585 + CCNA_02482 0.37 +0.5 2,629,594 + CCNA_02482 0.38 -2.3 2,629,594 - CCNA_02482 0.38 -0.6 2,629,609 + CCNA_02482 0.40 +0.4 2,629,618 + CCNA_02482 0.41 -0.4 2,629,618 + CCNA_02482 0.41 -0.6 2,629,618 + CCNA_02482 0.41 +0.6 2,629,618 + CCNA_02482 0.41 -0.4 2,629,618 + CCNA_02482 0.41 +2.8 2,629,625 + CCNA_02482 0.42 -0.7 2,629,626 - CCNA_02482 0.42 +0.5 2,629,630 + CCNA_02482 0.42 +0.2 2,629,638 - CCNA_02482 0.43 +0.0 2,629,638 - CCNA_02482 0.43 -0.4 2,629,690 + CCNA_02482 0.49 -1.0 2,629,691 - CCNA_02482 0.49 -1.7 2,629,787 + CCNA_02482 0.59 -2.8 2,629,800 + CCNA_02482 0.60 -2.1 2,629,800 + CCNA_02482 0.60 -1.1 2,629,813 - CCNA_02482 0.62 -0.5 2,629,835 + CCNA_02482 0.64 -1.6 2,629,835 + CCNA_02482 0.64 -1.1 2,629,835 + CCNA_02482 0.64 -2.1 2,629,835 + CCNA_02482 0.64 -2.1 2,629,835 + CCNA_02482 0.64 +0.1 2,629,843 - CCNA_02482 0.65 -2.0 2,629,843 - CCNA_02482 0.65 -1.6 2,629,843 - CCNA_02482 0.65 -0.7 2,629,860 + CCNA_02482 0.67 -2.3 2,629,861 + CCNA_02482 0.67 -0.7 2,629,868 - CCNA_02482 0.68 -2.0 2,629,874 - CCNA_02482 0.68 +1.1 2,629,876 + CCNA_02482 0.68 +1.2 2,629,884 - CCNA_02482 0.69 -2.0 2,629,887 + CCNA_02482 0.70 -1.6 2,629,895 - CCNA_02482 0.70 +2.5 2,629,899 + CCNA_02482 0.71 -0.3 2,629,938 + CCNA_02482 0.75 -3.0 2,629,946 - CCNA_02482 0.76 -2.2 2,630,008 + CCNA_02482 0.82 -1.1 2,630,008 + CCNA_02482 0.82 +1.9 2,630,013 + CCNA_02482 0.83 -2.0 2,630,013 + CCNA_02482 0.83 -1.0 2,630,016 - CCNA_02482 0.83 -1.4 2,630,016 - CCNA_02482 0.83 -0.5 2,630,016 - CCNA_02482 0.83 +0.3 2,630,016 - CCNA_02482 0.83 -1.1 2,630,016 - CCNA_02482 0.83 -2.2 2,630,037 + CCNA_02482 0.86 -0.5 2,630,037 + CCNA_02482 0.86 -1.0 2,630,037 + CCNA_02482 0.86 -0.3 2,630,037 + CCNA_02482 0.86 -1.8 2,630,037 + CCNA_02482 0.86 -1.7 2,630,037 + CCNA_02482 0.86 -2.2 2,630,045 - CCNA_02482 0.86 +1.1 2,630,045 - CCNA_02482 0.86 -3.1 2,630,045 - CCNA_02482 0.86 -0.3 2,630,045 - CCNA_02482 0.86 -0.2 2,630,045 - CCNA_02482 0.86 -2.3 2,630,047 + CCNA_02482 0.87 -1.1 2,630,142 - -0.2 2,630,148 - -1.6 2,630,161 + -2.1 2,630,181 + -1.2 2,630,202 + -1.7 2,630,204 + -0.7 2,630,204 + -1.1 2,630,287 - -0.8 2,630,311 + +1.0 2,630,312 + -0.0 2,630,312 + +0.0 2,630,319 + -0.5 2,630,320 - -0.3 2,630,327 - -0.2 2,630,327 - -1.3 2,630,327 - -0.3 2,630,329 + -0.3 2,630,329 + +0.5 2,630,337 - -1.7 2,630,337 - -0.5 2,630,355 + -0.8 2,630,359 + -0.8 2,630,377 + CCNA_02483 0.10 -0.7 2,630,403 + CCNA_02483 0.12 -1.0 2,630,419 - CCNA_02483 0.13 -1.8 2,630,508 + CCNA_02483 0.19 -1.3 2,630,516 - CCNA_02483 0.20 +1.8 2,630,560 + CCNA_02483 0.23 +0.5 2,630,564 + CCNA_02483 0.23 -1.5 2,630,585 - CCNA_02483 0.24 -0.3 2,630,770 - CCNA_02483 0.37 +0.0 2,630,770 - CCNA_02483 0.37 -2.4 2,630,792 + CCNA_02483 0.38 -3.0 2,630,797 + CCNA_02483 0.39 -1.8 2,630,834 - CCNA_02483 0.41 +0.9 2,630,842 + CCNA_02483 0.42 -0.9 2,630,842 + CCNA_02483 0.42 +0.1 2,630,860 + CCNA_02483 0.43 -0.2 2,630,882 + CCNA_02483 0.44 -1.0 2,630,937 + CCNA_02483 0.48 -0.3 2,630,968 + CCNA_02483 0.50 -1.6 2,630,977 + CCNA_02483 0.51 -0.6 2,630,985 - CCNA_02483 0.51 -1.2 2,630,995 - CCNA_02483 0.52 -2.7 2,631,000 + CCNA_02483 0.52 -0.3 2,631,040 + CCNA_02483 0.55 -1.5 2,631,057 + CCNA_02483 0.56 -1.1 2,631,065 - CCNA_02483 0.57 -0.8 2,631,066 - CCNA_02483 0.57 -1.4 2,631,084 + CCNA_02483 0.58 -0.8 2,631,095 + CCNA_02483 0.59 -2.0 2,631,095 + CCNA_02483 0.59 +0.2 2,631,095 + CCNA_02483 0.59 -1.1 2,631,103 - CCNA_02483 0.59 -2.3 2,631,114 + CCNA_02483 0.60 -1.6 2,631,122 - CCNA_02483 0.60 +1.1
Or see this region's nucleotide sequence