Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02384

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02382 and CCNA_02383 overlap by 4 nucleotidesCCNA_02383 and CCNA_02384 are separated by 82 nucleotidesCCNA_02384 and CCNA_02385 are separated by 195 nucleotides CCNA_02382: CCNA_02382 - membrane peptidase, M23 family, at 2,524,178 to 2,525,074 _02382 CCNA_02383: CCNA_02383 - alpha/beta hydrolase family protein, at 2,525,071 to 2,525,940 _02383 CCNA_02384: CCNA_02384 - very-long-chain acyl-CoA synthetase, at 2,526,023 to 2,527,813 _02384 CCNA_02385: CCNA_02385 - 3-deoxy-7-phosphoheptulonate synthase, at 2,528,009 to 2,529,388 _02385 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2525.027 kb on - strandat 2525.027 kb on - strandat 2525.027 kb on - strandat 2525.027 kb on - strandat 2525.027 kb on - strandat 2525.027 kb on - strandat 2525.027 kb on - strandat 2525.029 kb on + strandat 2525.037 kb on - strandat 2525.042 kb on - strandat 2525.069 kb on + strandat 2525.070 kb on - strandat 2525.070 kb on - strandat 2525.075 kb on + strandat 2525.084 kb on + strandat 2525.127 kb on + strandat 2525.146 kb on + strandat 2525.146 kb on + strandat 2525.149 kb on - strandat 2525.154 kb on - strandat 2525.175 kb on - strand, within CCNA_02383at 2525.182 kb on + strand, within CCNA_02383at 2525.185 kb on - strand, within CCNA_02383at 2525.243 kb on + strand, within CCNA_02383at 2525.260 kb on - strand, within CCNA_02383at 2525.271 kb on - strand, within CCNA_02383at 2525.353 kb on + strand, within CCNA_02383at 2525.361 kb on + strand, within CCNA_02383at 2525.409 kb on - strand, within CCNA_02383at 2525.483 kb on - strand, within CCNA_02383at 2525.486 kb on + strand, within CCNA_02383at 2525.536 kb on + strand, within CCNA_02383at 2525.541 kb on + strand, within CCNA_02383at 2525.544 kb on - strand, within CCNA_02383at 2525.544 kb on - strand, within CCNA_02383at 2525.544 kb on - strand, within CCNA_02383at 2525.544 kb on - strand, within CCNA_02383at 2525.554 kb on + strand, within CCNA_02383at 2525.554 kb on + strand, within CCNA_02383at 2525.569 kb on - strand, within CCNA_02383at 2525.569 kb on - strand, within CCNA_02383at 2525.569 kb on - strand, within CCNA_02383at 2525.569 kb on - strand, within CCNA_02383at 2525.574 kb on - strand, within CCNA_02383at 2525.615 kb on + strand, within CCNA_02383at 2525.618 kb on - strand, within CCNA_02383at 2525.623 kb on - strand, within CCNA_02383at 2525.675 kb on + strand, within CCNA_02383at 2525.688 kb on - strand, within CCNA_02383at 2525.770 kb on + strand, within CCNA_02383at 2525.778 kb on - strand, within CCNA_02383at 2525.818 kb on - strand, within CCNA_02383at 2525.843 kb on - strand, within CCNA_02383at 2525.919 kb on + strandat 2525.924 kb on + strandat 2525.924 kb on + strandat 2525.924 kb on + strandat 2525.925 kb on + strandat 2525.932 kb on - strandat 2525.942 kb on - strandat 2525.959 kb on + strandat 2525.959 kb on - strandat 2525.975 kb on + strandat 2526.006 kb on + strandat 2526.027 kb on + strandat 2526.083 kb on + strandat 2526.091 kb on - strandat 2526.122 kb on - strandat 2526.128 kb on - strandat 2526.130 kb on + strandat 2526.130 kb on + strandat 2526.138 kb on - strandat 2526.154 kb on - strandat 2526.164 kb on - strandat 2526.194 kb on - strandat 2526.228 kb on - strand, within CCNA_02384at 2526.267 kb on + strand, within CCNA_02384at 2526.270 kb on - strand, within CCNA_02384at 2526.270 kb on - strand, within CCNA_02384at 2526.270 kb on - strand, within CCNA_02384at 2526.336 kb on - strand, within CCNA_02384at 2526.377 kb on + strand, within CCNA_02384at 2526.433 kb on - strand, within CCNA_02384at 2526.479 kb on - strand, within CCNA_02384at 2526.479 kb on - strand, within CCNA_02384at 2526.479 kb on - strand, within CCNA_02384at 2526.524 kb on + strand, within CCNA_02384at 2526.532 kb on - strand, within CCNA_02384at 2526.539 kb on - strand, within CCNA_02384at 2526.608 kb on - strand, within CCNA_02384at 2526.800 kb on - strand, within CCNA_02384at 2526.800 kb on - strand, within CCNA_02384at 2526.824 kb on - strand, within CCNA_02384at 2526.835 kb on - strand, within CCNA_02384at 2526.840 kb on + strand, within CCNA_02384at 2526.866 kb on + strand, within CCNA_02384at 2526.880 kb on - strand, within CCNA_02384at 2526.883 kb on + strand, within CCNA_02384at 2526.906 kb on + strand, within CCNA_02384at 2526.984 kb on + strand, within CCNA_02384at 2526.984 kb on + strand, within CCNA_02384at 2526.992 kb on - strand, within CCNA_02384at 2527.007 kb on - strand, within CCNA_02384at 2527.032 kb on + strand, within CCNA_02384at 2527.032 kb on + strand, within CCNA_02384at 2527.037 kb on + strand, within CCNA_02384at 2527.040 kb on - strand, within CCNA_02384at 2527.040 kb on - strand, within CCNA_02384at 2527.040 kb on - strand, within CCNA_02384at 2527.040 kb on - strand, within CCNA_02384at 2527.040 kb on - strand, within CCNA_02384at 2527.064 kb on - strand, within CCNA_02384at 2527.064 kb on - strand, within CCNA_02384at 2527.071 kb on - strand, within CCNA_02384at 2527.098 kb on - strand, within CCNA_02384at 2527.098 kb on - strand, within CCNA_02384at 2527.122 kb on - strand, within CCNA_02384at 2527.171 kb on - strand, within CCNA_02384at 2527.182 kb on + strandat 2527.182 kb on + strand, within CCNA_02384at 2527.182 kb on + strand, within CCNA_02384at 2527.190 kb on - strand, within CCNA_02384at 2527.190 kb on - strand, within CCNA_02384at 2527.217 kb on - strand, within CCNA_02384at 2527.296 kb on + strand, within CCNA_02384at 2527.318 kb on - strand, within CCNA_02384at 2527.319 kb on + strand, within CCNA_02384at 2527.327 kb on - strand, within CCNA_02384at 2527.378 kb on - strand, within CCNA_02384at 2527.386 kb on - strand, within CCNA_02384at 2527.386 kb on - strand, within CCNA_02384at 2527.386 kb on - strand, within CCNA_02384at 2527.491 kb on + strand, within CCNA_02384at 2527.542 kb on + strand, within CCNA_02384at 2527.542 kb on + strand, within CCNA_02384at 2527.560 kb on + strand, within CCNA_02384at 2527.571 kb on + strand, within CCNA_02384at 2527.576 kb on + strand, within CCNA_02384at 2527.577 kb on + strand, within CCNA_02384at 2527.586 kb on - strand, within CCNA_02384at 2527.593 kb on - strand, within CCNA_02384at 2527.599 kb on + strand, within CCNA_02384at 2527.605 kb on - strand, within CCNA_02384at 2527.619 kb on + strand, within CCNA_02384at 2527.669 kb on - strandat 2527.680 kb on - strandat 2527.722 kb on - strandat 2527.727 kb on - strandat 2527.835 kb on + strandat 2527.835 kb on + strandat 2527.835 kb on + strandat 2527.843 kb on - strandat 2527.843 kb on - strandat 2527.843 kb on - strandat 2527.858 kb on + strandat 2527.866 kb on - strandat 2527.907 kb on + strandat 2527.932 kb on + strandat 2527.941 kb on + strandat 2527.987 kb on - strandat 2527.992 kb on + strandat 2528.061 kb on - strandat 2528.116 kb on + strandat 2528.116 kb on + strandat 2528.144 kb on + strandat 2528.152 kb on - strand, within CCNA_02385at 2528.152 kb on - strand, within CCNA_02385at 2528.152 kb on - strand, within CCNA_02385at 2528.152 kb on - strand, within CCNA_02385at 2528.178 kb on + strand, within CCNA_02385at 2528.182 kb on - strand, within CCNA_02385at 2528.184 kb on - strand, within CCNA_02385at 2528.196 kb on - strand, within CCNA_02385at 2528.211 kb on + strand, within CCNA_02385at 2528.218 kb on + strand, within CCNA_02385at 2528.218 kb on + strand, within CCNA_02385at 2528.234 kb on - strand, within CCNA_02385at 2528.234 kb on - strand, within CCNA_02385at 2528.234 kb on - strand, within CCNA_02385at 2528.234 kb on - strand, within CCNA_02385at 2528.245 kb on + strand, within CCNA_02385at 2528.253 kb on - strand, within CCNA_02385at 2528.253 kb on - strand, within CCNA_02385at 2528.253 kb on - strand, within CCNA_02385at 2528.308 kb on + strand, within CCNA_02385at 2528.316 kb on + strand, within CCNA_02385at 2528.324 kb on - strand, within CCNA_02385at 2528.431 kb on + strand, within CCNA_02385at 2528.431 kb on - strand, within CCNA_02385at 2528.433 kb on - strand, within CCNA_02385at 2528.439 kb on - strand, within CCNA_02385at 2528.439 kb on - strand, within CCNA_02385at 2528.453 kb on - strand, within CCNA_02385at 2528.485 kb on - strand, within CCNA_02385at 2528.521 kb on - strand, within CCNA_02385at 2528.589 kb on + strand, within CCNA_02385at 2528.592 kb on - strand, within CCNA_02385at 2528.599 kb on + strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.672 kb on - strand, within CCNA_02385at 2528.703 kb on - strand, within CCNA_02385at 2528.710 kb on + strand, within CCNA_02385at 2528.718 kb on - strand, within CCNA_02385at 2528.753 kb on + strand, within CCNA_02385at 2528.758 kb on + strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.763 kb on + strand, within CCNA_02385at 2528.764 kb on + strand, within CCNA_02385at 2528.774 kb on + strand, within CCNA_02385at 2528.774 kb on + strand, within CCNA_02385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
2,525,027 - -0.0
2,525,027 - +0.8
2,525,027 - +1.3
2,525,027 - +0.1
2,525,027 - +0.4
2,525,027 - +0.7
2,525,027 - +0.6
2,525,029 + -0.8
2,525,037 - +0.3
2,525,042 - +2.3
2,525,069 + -0.7
2,525,070 - +0.6
2,525,070 - +0.6
2,525,075 + -0.9
2,525,084 + -1.2
2,525,127 + +1.6
2,525,146 + +1.2
2,525,146 + -0.4
2,525,149 - +1.2
2,525,154 - +1.9
2,525,175 - CCNA_02383 0.12 -0.2
2,525,182 + CCNA_02383 0.13 -1.5
2,525,185 - CCNA_02383 0.13 +1.3
2,525,243 + CCNA_02383 0.20 -0.5
2,525,260 - CCNA_02383 0.22 +0.6
2,525,271 - CCNA_02383 0.23 +0.4
2,525,353 + CCNA_02383 0.32 -1.5
2,525,361 + CCNA_02383 0.33 -1.8
2,525,409 - CCNA_02383 0.39 -1.7
2,525,483 - CCNA_02383 0.47 -0.4
2,525,486 + CCNA_02383 0.48 -1.1
2,525,536 + CCNA_02383 0.53 -0.7
2,525,541 + CCNA_02383 0.54 -2.5
2,525,544 - CCNA_02383 0.54 +0.0
2,525,544 - CCNA_02383 0.54 +0.1
2,525,544 - CCNA_02383 0.54 +1.2
2,525,544 - CCNA_02383 0.54 +1.6
2,525,554 + CCNA_02383 0.56 -1.9
2,525,554 + CCNA_02383 0.56 +0.0
2,525,569 - CCNA_02383 0.57 +0.8
2,525,569 - CCNA_02383 0.57 +0.5
2,525,569 - CCNA_02383 0.57 +0.8
2,525,569 - CCNA_02383 0.57 +1.2
2,525,574 - CCNA_02383 0.58 +2.6
2,525,615 + CCNA_02383 0.63 -0.6
2,525,618 - CCNA_02383 0.63 +1.2
2,525,623 - CCNA_02383 0.63 +0.4
2,525,675 + CCNA_02383 0.69 +0.4
2,525,688 - CCNA_02383 0.71 +1.4
2,525,770 + CCNA_02383 0.80 +0.4
2,525,778 - CCNA_02383 0.81 +0.9
2,525,818 - CCNA_02383 0.86 +0.8
2,525,843 - CCNA_02383 0.89 +0.8
2,525,919 + -2.1
2,525,924 + +0.2
2,525,924 + +1.6
2,525,924 + -1.5
2,525,925 + -1.9
2,525,932 - +1.3
2,525,942 - +1.4
2,525,959 + -1.7
2,525,959 - +1.1
2,525,975 + +0.2
2,526,006 + +2.0
2,526,027 + -0.4
2,526,083 + -0.4
2,526,091 - +1.3
2,526,122 - +1.2
2,526,128 - +1.5
2,526,130 + -1.0
2,526,130 + -2.2
2,526,138 - +1.0
2,526,154 - +1.3
2,526,164 - +1.3
2,526,194 - +1.2
2,526,228 - CCNA_02384 0.11 +0.7
2,526,267 + CCNA_02384 0.14 -1.4
2,526,270 - CCNA_02384 0.14 +2.1
2,526,270 - CCNA_02384 0.14 +0.6
2,526,270 - CCNA_02384 0.14 +1.4
2,526,336 - CCNA_02384 0.17 +0.4
2,526,377 + CCNA_02384 0.20 -0.2
2,526,433 - CCNA_02384 0.23 +1.0
2,526,479 - CCNA_02384 0.25 +1.5
2,526,479 - CCNA_02384 0.25 +1.6
2,526,479 - CCNA_02384 0.25 +1.1
2,526,524 + CCNA_02384 0.28 -2.5
2,526,532 - CCNA_02384 0.28 +1.3
2,526,539 - CCNA_02384 0.29 +0.8
2,526,608 - CCNA_02384 0.33 +1.3
2,526,800 - CCNA_02384 0.43 +0.2
2,526,800 - CCNA_02384 0.43 +1.6
2,526,824 - CCNA_02384 0.45 +1.6
2,526,835 - CCNA_02384 0.45 +0.2
2,526,840 + CCNA_02384 0.46 -1.7
2,526,866 + CCNA_02384 0.47 -1.8
2,526,880 - CCNA_02384 0.48 +2.2
2,526,883 + CCNA_02384 0.48 -0.6
2,526,906 + CCNA_02384 0.49 -1.8
2,526,984 + CCNA_02384 0.54 +0.5
2,526,984 + CCNA_02384 0.54 -2.0
2,526,992 - CCNA_02384 0.54 +1.2
2,527,007 - CCNA_02384 0.55 +0.4
2,527,032 + CCNA_02384 0.56 -2.0
2,527,032 + CCNA_02384 0.56 +1.6
2,527,037 + CCNA_02384 0.57 -0.9
2,527,040 - CCNA_02384 0.57 +0.5
2,527,040 - CCNA_02384 0.57 +2.2
2,527,040 - CCNA_02384 0.57 +0.9
2,527,040 - CCNA_02384 0.57 +1.4
2,527,040 - CCNA_02384 0.57 +0.6
2,527,064 - CCNA_02384 0.58 +0.4
2,527,064 - CCNA_02384 0.58 +2.2
2,527,071 - CCNA_02384 0.59 +0.8
2,527,098 - CCNA_02384 0.60 +1.2
2,527,098 - CCNA_02384 0.60 +1.7
2,527,122 - CCNA_02384 0.61 -1.0
2,527,171 - CCNA_02384 0.64 +0.8
2,527,182 + -0.0
2,527,182 + CCNA_02384 0.65 -3.3
2,527,182 + CCNA_02384 0.65 -0.6
2,527,190 - CCNA_02384 0.65 +0.9
2,527,190 - CCNA_02384 0.65 +0.7
2,527,217 - CCNA_02384 0.67 +0.7
2,527,296 + CCNA_02384 0.71 +0.9
2,527,318 - CCNA_02384 0.72 +1.0
2,527,319 + CCNA_02384 0.72 -1.8
2,527,327 - CCNA_02384 0.73 +1.3
2,527,378 - CCNA_02384 0.76 +1.1
2,527,386 - CCNA_02384 0.76 +1.0
2,527,386 - CCNA_02384 0.76 +0.4
2,527,386 - CCNA_02384 0.76 +0.6
2,527,491 + CCNA_02384 0.82 -1.4
2,527,542 + CCNA_02384 0.85 -1.3
2,527,542 + CCNA_02384 0.85 +0.2
2,527,560 + CCNA_02384 0.86 -1.1
2,527,571 + CCNA_02384 0.86 -1.5
2,527,576 + CCNA_02384 0.87 -0.0
2,527,577 + CCNA_02384 0.87 -1.5
2,527,586 - CCNA_02384 0.87 +0.5
2,527,593 - CCNA_02384 0.88 +0.2
2,527,599 + CCNA_02384 0.88 -0.0
2,527,605 - CCNA_02384 0.88 +2.6
2,527,619 + CCNA_02384 0.89 -1.7
2,527,669 - +0.1
2,527,680 - +1.4
2,527,722 - -0.8
2,527,727 - +1.1
2,527,835 + -0.8
2,527,835 + +0.8
2,527,835 + +0.3
2,527,843 - +1.0
2,527,843 - +0.2
2,527,843 - -0.4
2,527,858 + -1.7
2,527,866 - -0.3
2,527,907 + -0.9
2,527,932 + -1.0
2,527,941 + +0.4
2,527,987 - +1.6
2,527,992 + -0.9
2,528,061 - +2.0
2,528,116 + -2.3
2,528,116 + +1.7
2,528,144 + -2.1
2,528,152 - CCNA_02385 0.10 +0.6
2,528,152 - CCNA_02385 0.10 +0.8
2,528,152 - CCNA_02385 0.10 +0.3
2,528,152 - CCNA_02385 0.10 -0.0
2,528,178 + CCNA_02385 0.12 -1.2
2,528,182 - CCNA_02385 0.13 +1.3
2,528,184 - CCNA_02385 0.13 +0.6
2,528,196 - CCNA_02385 0.14 +2.0
2,528,211 + CCNA_02385 0.15 +0.2
2,528,218 + CCNA_02385 0.15 -1.4
2,528,218 + CCNA_02385 0.15 -0.8
2,528,234 - CCNA_02385 0.16 -0.8
2,528,234 - CCNA_02385 0.16 -0.6
2,528,234 - CCNA_02385 0.16 +1.6
2,528,234 - CCNA_02385 0.16 +0.6
2,528,245 + CCNA_02385 0.17 -0.9
2,528,253 - CCNA_02385 0.18 -0.4
2,528,253 - CCNA_02385 0.18 +1.2
2,528,253 - CCNA_02385 0.18 +0.6
2,528,308 + CCNA_02385 0.22 -0.7
2,528,316 + CCNA_02385 0.22 -1.8
2,528,324 - CCNA_02385 0.23 +0.4
2,528,431 + CCNA_02385 0.31 -0.0
2,528,431 - CCNA_02385 0.31 -0.5
2,528,433 - CCNA_02385 0.31 +1.9
2,528,439 - CCNA_02385 0.31 +0.3
2,528,439 - CCNA_02385 0.31 +0.9
2,528,453 - CCNA_02385 0.32 +0.6
2,528,485 - CCNA_02385 0.34 -1.5
2,528,521 - CCNA_02385 0.37 +0.7
2,528,589 + CCNA_02385 0.42 +0.3
2,528,592 - CCNA_02385 0.42 -1.4
2,528,599 + CCNA_02385 0.43 -0.6
2,528,653 - CCNA_02385 0.47 +0.9
2,528,653 - CCNA_02385 0.47 -0.1
2,528,653 - CCNA_02385 0.47 -0.0
2,528,653 - CCNA_02385 0.47 +1.3
2,528,672 - CCNA_02385 0.48 +2.8
2,528,703 - CCNA_02385 0.50 -0.6
2,528,710 + CCNA_02385 0.51 -2.2
2,528,718 - CCNA_02385 0.51 -0.0
2,528,753 + CCNA_02385 0.54 -2.8
2,528,758 + CCNA_02385 0.54 -1.9
2,528,761 - CCNA_02385 0.54 +0.1
2,528,761 - CCNA_02385 0.54 +0.1
2,528,761 - CCNA_02385 0.54 +0.2
2,528,761 - CCNA_02385 0.54 +0.3
2,528,763 + CCNA_02385 0.55 -2.1
2,528,764 + CCNA_02385 0.55 -0.4
2,528,774 + CCNA_02385 0.55 -1.0
2,528,774 + CCNA_02385 0.55 +1.3

Or see this region's nucleotide sequence