Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01491 and CCNA_01492 are separated by 24 nucleotides CCNA_01492 and CCNA_01493 are separated by 73 nucleotides
CCNA_01491: CCNA_01491 - cystathionine beta-lyase, at 1,599,999 to 1,601,159
_01491
CCNA_01492: CCNA_01492 - 3-mercaptopyruvate sulfurtransferase, at 1,601,184 to 1,602,041
_01492
CCNA_01493: CCNA_01493 - cysteine synthase, at 1,602,115 to 1,603,113
_01493
Position (kb)
1601
1602
1603 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1600.187 kb on - strand, within CCNA_01491 at 1600.187 kb on - strand, within CCNA_01491 at 1600.237 kb on + strand, within CCNA_01491 at 1600.257 kb on - strand, within CCNA_01491 at 1600.257 kb on - strand, within CCNA_01491 at 1600.331 kb on - strand, within CCNA_01491 at 1600.360 kb on - strand, within CCNA_01491 at 1600.360 kb on - strand, within CCNA_01491 at 1600.360 kb on - strand, within CCNA_01491 at 1600.385 kb on - strand, within CCNA_01491 at 1600.395 kb on + strand, within CCNA_01491 at 1600.423 kb on - strand, within CCNA_01491 at 1600.434 kb on + strand, within CCNA_01491 at 1600.435 kb on + strand, within CCNA_01491 at 1600.435 kb on + strand, within CCNA_01491 at 1600.438 kb on - strand, within CCNA_01491 at 1600.443 kb on - strand, within CCNA_01491 at 1600.443 kb on - strand, within CCNA_01491 at 1600.443 kb on - strand, within CCNA_01491 at 1600.486 kb on + strand, within CCNA_01491 at 1600.494 kb on - strand, within CCNA_01491 at 1600.500 kb on - strand, within CCNA_01491 at 1600.515 kb on + strand, within CCNA_01491 at 1600.523 kb on - strand, within CCNA_01491 at 1600.576 kb on - strand, within CCNA_01491 at 1600.603 kb on + strand, within CCNA_01491 at 1600.742 kb on + strand, within CCNA_01491 at 1600.764 kb on - strand, within CCNA_01491 at 1600.782 kb on - strand, within CCNA_01491 at 1600.787 kb on + strand, within CCNA_01491 at 1600.787 kb on + strand, within CCNA_01491 at 1600.787 kb on + strand, within CCNA_01491 at 1600.795 kb on - strand, within CCNA_01491 at 1600.795 kb on - strand, within CCNA_01491 at 1600.815 kb on - strand, within CCNA_01491 at 1600.863 kb on + strand, within CCNA_01491 at 1600.877 kb on - strand, within CCNA_01491 at 1600.932 kb on - strand, within CCNA_01491 at 1600.944 kb on - strand, within CCNA_01491 at 1600.951 kb on - strand, within CCNA_01491 at 1600.966 kb on + strand, within CCNA_01491 at 1600.970 kb on - strand, within CCNA_01491 at 1601.004 kb on - strand, within CCNA_01491 at 1601.027 kb on + strand, within CCNA_01491 at 1601.043 kb on - strand, within CCNA_01491 at 1601.045 kb on - strand at 1601.068 kb on - strand at 1601.079 kb on - strand at 1601.114 kb on - strand at 1601.121 kb on + strand at 1601.164 kb on + strand at 1601.253 kb on - strand at 1601.255 kb on + strand at 1601.263 kb on - strand at 1601.265 kb on + strand at 1601.325 kb on + strand, within CCNA_01492 at 1601.325 kb on + strand, within CCNA_01492 at 1601.333 kb on + strand, within CCNA_01492 at 1601.333 kb on - strand, within CCNA_01492 at 1601.396 kb on + strand, within CCNA_01492 at 1601.404 kb on - strand, within CCNA_01492 at 1601.409 kb on - strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.493 kb on - strand, within CCNA_01492 at 1601.625 kb on + strand, within CCNA_01492 at 1601.687 kb on - strand, within CCNA_01492 at 1601.757 kb on + strand, within CCNA_01492 at 1601.763 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.789 kb on + strand, within CCNA_01492 at 1601.797 kb on - strand, within CCNA_01492 at 1601.797 kb on - strand, within CCNA_01492 at 1601.832 kb on + strand, within CCNA_01492 at 1601.847 kb on + strand, within CCNA_01492 at 1601.901 kb on - strand, within CCNA_01492 at 1601.958 kb on + strand at 1601.992 kb on - strand at 1602.004 kb on - strand at 1602.005 kb on + strand at 1602.071 kb on + strand at 1602.071 kb on + strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.127 kb on - strand at 1602.127 kb on - strand at 1602.161 kb on + strand at 1602.161 kb on + strand at 1602.171 kb on + strand at 1602.178 kb on + strand at 1602.179 kb on - strand at 1602.197 kb on + strand at 1602.207 kb on - strand at 1602.222 kb on + strand, within CCNA_01493 at 1602.222 kb on + strand, within CCNA_01493 at 1602.222 kb on + strand, within CCNA_01493 at 1602.222 kb on + strand, within CCNA_01493 at 1602.230 kb on - strand, within CCNA_01493 at 1602.268 kb on + strand, within CCNA_01493 at 1602.271 kb on - strand, within CCNA_01493 at 1602.272 kb on - strand, within CCNA_01493 at 1602.288 kb on + strand, within CCNA_01493 at 1602.296 kb on - strand, within CCNA_01493 at 1602.296 kb on - strand, within CCNA_01493 at 1602.297 kb on - strand, within CCNA_01493 at 1602.322 kb on - strand, within CCNA_01493 at 1602.334 kb on + strand at 1602.382 kb on - strand, within CCNA_01493 at 1602.386 kb on + strand, within CCNA_01493 at 1602.391 kb on + strand, within CCNA_01493 at 1602.404 kb on + strand, within CCNA_01493 at 1602.457 kb on - strand, within CCNA_01493 at 1602.457 kb on - strand, within CCNA_01493 at 1602.525 kb on + strand, within CCNA_01493 at 1602.533 kb on - strand, within CCNA_01493 at 1602.533 kb on - strand, within CCNA_01493 at 1602.541 kb on + strand, within CCNA_01493 at 1602.579 kb on - strand, within CCNA_01493 at 1602.593 kb on - strand, within CCNA_01493 at 1602.676 kb on - strand, within CCNA_01493 at 1602.686 kb on + strand, within CCNA_01493 at 1602.695 kb on - strand, within CCNA_01493 at 1602.743 kb on + strand, within CCNA_01493 at 1602.797 kb on - strand, within CCNA_01493 at 1602.824 kb on - strand, within CCNA_01493 at 1602.839 kb on - strand, within CCNA_01493 at 1602.848 kb on + strand, within CCNA_01493 at 1602.853 kb on + strand, within CCNA_01493 at 1602.869 kb on + strand, within CCNA_01493 at 1602.869 kb on + strand, within CCNA_01493 at 1602.877 kb on - strand, within CCNA_01493 at 1602.882 kb on - strand, within CCNA_01493 at 1602.898 kb on - strand, within CCNA_01493 at 1602.912 kb on - strand, within CCNA_01493 at 1602.938 kb on + strand, within CCNA_01493 at 1602.938 kb on + strand, within CCNA_01493 at 1602.946 kb on - strand, within CCNA_01493 at 1602.946 kb on - strand, within CCNA_01493 at 1602.951 kb on - strand, within CCNA_01493 at 1602.979 kb on + strand, within CCNA_01493 at 1602.979 kb on + strand, within CCNA_01493 at 1602.979 kb on + strand, within CCNA_01493 at 1602.987 kb on - strand, within CCNA_01493 at 1602.987 kb on - strand, within CCNA_01493 at 1603.015 kb on - strand at 1603.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 1,600,187 - CCNA_01491 0.16 -0.2 1,600,187 - CCNA_01491 0.16 +0.5 1,600,237 + CCNA_01491 0.20 -1.8 1,600,257 - CCNA_01491 0.22 -1.2 1,600,257 - CCNA_01491 0.22 -1.0 1,600,331 - CCNA_01491 0.29 +1.7 1,600,360 - CCNA_01491 0.31 +0.0 1,600,360 - CCNA_01491 0.31 +0.6 1,600,360 - CCNA_01491 0.31 +0.7 1,600,385 - CCNA_01491 0.33 +1.9 1,600,395 + CCNA_01491 0.34 -2.0 1,600,423 - CCNA_01491 0.37 +0.1 1,600,434 + CCNA_01491 0.37 -1.1 1,600,435 + CCNA_01491 0.38 +0.6 1,600,435 + CCNA_01491 0.38 -0.8 1,600,438 - CCNA_01491 0.38 +0.8 1,600,443 - CCNA_01491 0.38 +0.4 1,600,443 - CCNA_01491 0.38 +0.3 1,600,443 - CCNA_01491 0.38 +0.7 1,600,486 + CCNA_01491 0.42 -1.2 1,600,494 - CCNA_01491 0.43 +1.0 1,600,500 - CCNA_01491 0.43 -1.3 1,600,515 + CCNA_01491 0.44 -2.0 1,600,523 - CCNA_01491 0.45 +0.7 1,600,576 - CCNA_01491 0.50 +0.1 1,600,603 + CCNA_01491 0.52 -1.6 1,600,742 + CCNA_01491 0.64 +0.7 1,600,764 - CCNA_01491 0.66 -0.8 1,600,782 - CCNA_01491 0.67 +0.6 1,600,787 + CCNA_01491 0.68 -1.2 1,600,787 + CCNA_01491 0.68 -1.1 1,600,787 + CCNA_01491 0.68 +0.4 1,600,795 - CCNA_01491 0.69 +0.6 1,600,795 - CCNA_01491 0.69 -0.7 1,600,815 - CCNA_01491 0.70 -0.5 1,600,863 + CCNA_01491 0.74 -2.5 1,600,877 - CCNA_01491 0.76 -0.9 1,600,932 - CCNA_01491 0.80 -1.6 1,600,944 - CCNA_01491 0.81 -0.6 1,600,951 - CCNA_01491 0.82 -0.2 1,600,966 + CCNA_01491 0.83 -1.3 1,600,970 - CCNA_01491 0.84 +0.6 1,601,004 - CCNA_01491 0.87 +0.3 1,601,027 + CCNA_01491 0.89 -0.6 1,601,043 - CCNA_01491 0.90 -0.0 1,601,045 - +0.7 1,601,068 - -0.1 1,601,079 - +0.0 1,601,114 - +0.9 1,601,121 + +0.1 1,601,164 + -0.3 1,601,253 - +0.8 1,601,255 + +0.4 1,601,263 - +0.5 1,601,265 + +0.7 1,601,325 + CCNA_01492 0.16 -2.1 1,601,325 + CCNA_01492 0.16 -1.4 1,601,333 + CCNA_01492 0.17 -0.3 1,601,333 - CCNA_01492 0.17 +1.2 1,601,396 + CCNA_01492 0.25 -0.7 1,601,404 - CCNA_01492 0.26 +0.8 1,601,409 - CCNA_01492 0.26 +2.5 1,601,480 + CCNA_01492 0.34 +0.7 1,601,480 + CCNA_01492 0.34 +1.4 1,601,480 + CCNA_01492 0.34 +1.6 1,601,480 + CCNA_01492 0.34 -1.8 1,601,488 - CCNA_01492 0.35 +0.4 1,601,488 - CCNA_01492 0.35 -0.1 1,601,488 - CCNA_01492 0.35 +1.7 1,601,488 - CCNA_01492 0.35 +1.3 1,601,488 - CCNA_01492 0.35 +1.3 1,601,493 - CCNA_01492 0.36 +1.3 1,601,625 + CCNA_01492 0.51 -2.7 1,601,687 - CCNA_01492 0.59 +2.3 1,601,757 + CCNA_01492 0.67 -0.6 1,601,763 - CCNA_01492 0.67 +0.1 1,601,765 - CCNA_01492 0.68 +2.0 1,601,765 - CCNA_01492 0.68 +1.5 1,601,765 - CCNA_01492 0.68 -1.5 1,601,765 - CCNA_01492 0.68 +0.6 1,601,789 + CCNA_01492 0.71 -2.2 1,601,797 - CCNA_01492 0.71 +1.1 1,601,797 - CCNA_01492 0.71 +2.5 1,601,832 + CCNA_01492 0.76 -0.3 1,601,847 + CCNA_01492 0.77 +1.2 1,601,901 - CCNA_01492 0.84 +1.2 1,601,958 + -1.3 1,601,992 - +1.3 1,602,004 - +1.6 1,602,005 + -0.4 1,602,071 + -2.1 1,602,071 + -0.6 1,602,079 - +1.1 1,602,079 - +1.1 1,602,079 - +0.9 1,602,079 - +0.5 1,602,079 - +1.1 1,602,127 - +0.7 1,602,127 - +0.3 1,602,161 + +0.1 1,602,161 + -0.4 1,602,171 + -0.5 1,602,178 + -1.9 1,602,179 - -0.6 1,602,197 + -0.2 1,602,207 - -0.5 1,602,222 + CCNA_01493 0.11 -1.3 1,602,222 + CCNA_01493 0.11 +0.8 1,602,222 + CCNA_01493 0.11 -0.8 1,602,222 + CCNA_01493 0.11 -0.6 1,602,230 - CCNA_01493 0.12 -0.6 1,602,268 + CCNA_01493 0.15 -1.1 1,602,271 - CCNA_01493 0.16 +0.2 1,602,272 - CCNA_01493 0.16 +0.6 1,602,288 + CCNA_01493 0.17 -2.8 1,602,296 - CCNA_01493 0.18 -0.5 1,602,296 - CCNA_01493 0.18 -2.3 1,602,297 - CCNA_01493 0.18 +0.2 1,602,322 - CCNA_01493 0.21 -1.2 1,602,334 + +2.7 1,602,382 - CCNA_01493 0.27 +0.7 1,602,386 + CCNA_01493 0.27 +0.1 1,602,391 + CCNA_01493 0.28 -1.2 1,602,404 + CCNA_01493 0.29 -0.9 1,602,457 - CCNA_01493 0.34 +0.3 1,602,457 - CCNA_01493 0.34 +0.5 1,602,525 + CCNA_01493 0.41 -1.0 1,602,533 - CCNA_01493 0.42 +0.2 1,602,533 - CCNA_01493 0.42 -1.4 1,602,541 + CCNA_01493 0.43 -0.9 1,602,579 - CCNA_01493 0.46 +0.3 1,602,593 - CCNA_01493 0.48 -2.1 1,602,676 - CCNA_01493 0.56 -2.3 1,602,686 + CCNA_01493 0.57 -1.5 1,602,695 - CCNA_01493 0.58 +1.7 1,602,743 + CCNA_01493 0.63 +0.8 1,602,797 - CCNA_01493 0.68 -1.3 1,602,824 - CCNA_01493 0.71 -0.8 1,602,839 - CCNA_01493 0.72 +0.4 1,602,848 + CCNA_01493 0.73 -0.1 1,602,853 + CCNA_01493 0.74 -1.0 1,602,869 + CCNA_01493 0.75 +0.4 1,602,869 + CCNA_01493 0.75 -2.3 1,602,877 - CCNA_01493 0.76 -0.6 1,602,882 - CCNA_01493 0.77 +0.4 1,602,898 - CCNA_01493 0.78 +0.2 1,602,912 - CCNA_01493 0.80 -1.1 1,602,938 + CCNA_01493 0.82 -0.3 1,602,938 + CCNA_01493 0.82 +0.4 1,602,946 - CCNA_01493 0.83 -0.9 1,602,946 - CCNA_01493 0.83 -1.7 1,602,951 - CCNA_01493 0.84 +1.1 1,602,979 + CCNA_01493 0.86 +0.5 1,602,979 + CCNA_01493 0.86 -0.6 1,602,979 + CCNA_01493 0.86 +0.5 1,602,987 - CCNA_01493 0.87 +0.3 1,602,987 - CCNA_01493 0.87 -0.5 1,603,015 - +1.5 1,603,031 - -0.3
Or see this region's nucleotide sequence