Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00864

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00862 and CCNA_00863 overlap by 8 nucleotidesCCNA_00863 and CCNA_00864 are separated by 124 nucleotidesCCNA_00864 and CCNA_00865 are separated by 5 nucleotides CCNA_00862: CCNA_00862 - Xylonate dehydratase (EC 4.2.1.82) (from data), at 939,696 to 941,471 _00862 CCNA_00863: CCNA_00863 - xylonolactonase xylC, at 941,464 to 942,333 _00863 CCNA_00864: CCNA_00864 - D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data), at 942,458 to 943,204 _00864 CCNA_00865: CCNA_00865 - alpha-ketoglutaric semialdehyde dehydrogenase xylA, at 943,210 to 944,646 _00865 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 941.515 kb on + strandat 941.525 kb on + strandat 941.539 kb on + strandat 941.560 kb on + strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.569 kb on - strand, within CCNA_00863at 941.582 kb on + strand, within CCNA_00863at 941.596 kb on + strand, within CCNA_00863at 941.601 kb on + strand, within CCNA_00863at 941.615 kb on + strand, within CCNA_00863at 941.631 kb on + strand, within CCNA_00863at 941.639 kb on - strand, within CCNA_00863at 941.639 kb on - strand, within CCNA_00863at 941.654 kb on - strand, within CCNA_00863at 941.680 kb on + strand, within CCNA_00863at 941.704 kb on + strand, within CCNA_00863at 941.762 kb on + strand, within CCNA_00863at 941.770 kb on - strand, within CCNA_00863at 941.789 kb on - strand, within CCNA_00863at 941.815 kb on - strand, within CCNA_00863at 941.823 kb on + strand, within CCNA_00863at 941.823 kb on + strand, within CCNA_00863at 941.830 kb on + strand, within CCNA_00863at 941.831 kb on - strandat 941.838 kb on - strand, within CCNA_00863at 941.862 kb on + strand, within CCNA_00863at 941.863 kb on + strand, within CCNA_00863at 941.871 kb on - strand, within CCNA_00863at 941.903 kb on - strand, within CCNA_00863at 941.938 kb on + strand, within CCNA_00863at 941.951 kb on - strand, within CCNA_00863at 941.974 kb on - strand, within CCNA_00863at 941.976 kb on - strand, within CCNA_00863at 941.976 kb on - strand, within CCNA_00863at 941.983 kb on + strand, within CCNA_00863at 942.001 kb on - strand, within CCNA_00863at 942.018 kb on - strand, within CCNA_00863at 942.046 kb on + strand, within CCNA_00863at 942.073 kb on - strand, within CCNA_00863at 942.087 kb on - strand, within CCNA_00863at 942.166 kb on + strand, within CCNA_00863at 942.237 kb on + strand, within CCNA_00863at 942.252 kb on + strandat 942.253 kb on + strandat 942.261 kb on - strandat 942.272 kb on - strandat 942.274 kb on + strandat 942.327 kb on - strandat 942.358 kb on + strandat 942.366 kb on - strandat 942.368 kb on + strandat 942.375 kb on + strandat 942.415 kb on - strandat 942.464 kb on - strandat 942.495 kb on + strandat 942.495 kb on + strandat 942.495 kb on + strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.519 kb on + strandat 942.566 kb on - strand, within CCNA_00864at 942.571 kb on - strand, within CCNA_00864at 942.574 kb on - strand, within CCNA_00864at 942.595 kb on - strand, within CCNA_00864at 942.595 kb on - strand, within CCNA_00864at 942.596 kb on - strand, within CCNA_00864at 942.607 kb on - strand, within CCNA_00864at 942.623 kb on - strand, within CCNA_00864at 942.635 kb on - strand, within CCNA_00864at 942.641 kb on - strand, within CCNA_00864at 942.644 kb on + strand, within CCNA_00864at 942.644 kb on + strand, within CCNA_00864at 942.649 kb on + strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.687 kb on + strand, within CCNA_00864at 942.704 kb on + strand, within CCNA_00864at 942.750 kb on - strand, within CCNA_00864at 942.759 kb on - strand, within CCNA_00864at 942.837 kb on + strand, within CCNA_00864at 942.837 kb on + strand, within CCNA_00864at 942.845 kb on - strand, within CCNA_00864at 942.850 kb on - strand, within CCNA_00864at 942.859 kb on + strand, within CCNA_00864at 942.867 kb on - strand, within CCNA_00864at 942.867 kb on - strand, within CCNA_00864at 942.893 kb on + strand, within CCNA_00864at 942.983 kb on - strand, within CCNA_00864at 942.993 kb on - strand, within CCNA_00864at 943.000 kb on + strand, within CCNA_00864at 943.024 kb on + strand, within CCNA_00864at 943.046 kb on + strand, within CCNA_00864at 943.047 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.057 kb on - strand, within CCNA_00864at 943.059 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.111 kb on - strand, within CCNA_00864at 943.126 kb on + strand, within CCNA_00864at 943.134 kb on - strandat 943.187 kb on + strandat 943.208 kb on + strandat 943.208 kb on + strandat 943.216 kb on - strandat 943.229 kb on + strandat 943.229 kb on - strandat 943.237 kb on - strandat 943.272 kb on - strandat 943.299 kb on - strandat 943.351 kb on + strandat 943.351 kb on + strandat 943.359 kb on - strand, within CCNA_00865at 943.450 kb on + strand, within CCNA_00865at 943.458 kb on - strand, within CCNA_00865at 943.458 kb on - strand, within CCNA_00865at 943.483 kb on + strand, within CCNA_00865at 943.506 kb on - strand, within CCNA_00865at 943.545 kb on - strandat 943.559 kb on - strand, within CCNA_00865at 943.559 kb on - strand, within CCNA_00865at 943.591 kb on - strand, within CCNA_00865at 943.608 kb on - strand, within CCNA_00865at 943.655 kb on + strand, within CCNA_00865at 943.690 kb on - strand, within CCNA_00865at 943.702 kb on + strand, within CCNA_00865at 943.702 kb on - strand, within CCNA_00865at 943.723 kb on - strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.807 kb on + strand, within CCNA_00865at 943.834 kb on + strand, within CCNA_00865at 943.842 kb on - strand, within CCNA_00865at 943.856 kb on + strand, within CCNA_00865at 943.858 kb on + strand, within CCNA_00865at 943.863 kb on + strand, within CCNA_00865at 943.863 kb on + strand, within CCNA_00865at 943.868 kb on + strand, within CCNA_00865at 943.873 kb on + strand, within CCNA_00865at 943.876 kb on - strand, within CCNA_00865at 943.904 kb on + strand, within CCNA_00865at 943.921 kb on + strand, within CCNA_00865at 943.922 kb on - strand, within CCNA_00865at 943.926 kb on + strand, within CCNA_00865at 944.003 kb on + strand, within CCNA_00865at 944.003 kb on + strand, within CCNA_00865at 944.086 kb on - strand, within CCNA_00865at 944.126 kb on + strand, within CCNA_00865at 944.134 kb on - strand, within CCNA_00865at 944.134 kb on - strand, within CCNA_00865at 944.141 kb on + strand, within CCNA_00865

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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941,515 + -0.9
941,525 + +0.6
941,539 + -1.8
941,560 + CCNA_00863 0.11 -0.1
941,568 - CCNA_00863 0.12 +0.9
941,568 - CCNA_00863 0.12 -0.1
941,568 - CCNA_00863 0.12 +0.9
941,569 - CCNA_00863 0.12 +0.4
941,582 + CCNA_00863 0.14 -0.6
941,596 + CCNA_00863 0.15 +0.1
941,601 + CCNA_00863 0.16 -0.4
941,615 + CCNA_00863 0.17 -0.2
941,631 + CCNA_00863 0.19 +0.6
941,639 - CCNA_00863 0.20 -1.6
941,639 - CCNA_00863 0.20 +0.5
941,654 - CCNA_00863 0.22 +0.7
941,680 + CCNA_00863 0.25 +0.7
941,704 + CCNA_00863 0.28 -2.1
941,762 + CCNA_00863 0.34 +1.1
941,770 - CCNA_00863 0.35 +1.6
941,789 - CCNA_00863 0.37 +0.2
941,815 - CCNA_00863 0.40 -1.0
941,823 + CCNA_00863 0.41 -1.6
941,823 + CCNA_00863 0.41 -0.6
941,830 + CCNA_00863 0.42 +0.9
941,831 - -0.5
941,838 - CCNA_00863 0.43 -1.9
941,862 + CCNA_00863 0.46 +1.0
941,863 + CCNA_00863 0.46 -1.2
941,871 - CCNA_00863 0.47 -2.2
941,903 - CCNA_00863 0.50 -1.5
941,938 + CCNA_00863 0.54 -0.7
941,951 - CCNA_00863 0.56 -0.5
941,974 - CCNA_00863 0.59 -1.5
941,976 - CCNA_00863 0.59 -1.1
941,976 - CCNA_00863 0.59 +0.1
941,983 + CCNA_00863 0.60 -0.3
942,001 - CCNA_00863 0.62 -0.3
942,018 - CCNA_00863 0.64 -0.3
942,046 + CCNA_00863 0.67 -1.0
942,073 - CCNA_00863 0.70 -1.7
942,087 - CCNA_00863 0.72 -0.9
942,166 + CCNA_00863 0.81 -1.4
942,237 + CCNA_00863 0.89 -0.0
942,252 + +0.8
942,253 + +0.1
942,261 - -0.0
942,272 - -2.2
942,274 + +0.9
942,327 - -0.3
942,358 + -2.1
942,366 - -0.1
942,368 + +1.0
942,375 + +0.5
942,415 - -0.7
942,464 - -0.4
942,495 + -1.1
942,495 + -0.3
942,495 + -0.6
942,503 - +0.7
942,503 - +3.3
942,503 - +0.7
942,503 - -0.7
942,503 - -2.0
942,503 - -2.3
942,503 - +0.6
942,503 - -0.2
942,503 - -1.0
942,503 - -0.6
942,503 - -0.3
942,519 + -2.4
942,566 - CCNA_00864 0.14 -0.1
942,571 - CCNA_00864 0.15 -0.6
942,574 - CCNA_00864 0.16 -0.7
942,595 - CCNA_00864 0.18 +0.6
942,595 - CCNA_00864 0.18 +0.4
942,596 - CCNA_00864 0.18 +1.0
942,607 - CCNA_00864 0.20 +0.5
942,623 - CCNA_00864 0.22 -0.4
942,635 - CCNA_00864 0.24 +0.5
942,641 - CCNA_00864 0.24 +0.5
942,644 + CCNA_00864 0.25 +0.1
942,644 + CCNA_00864 0.25 -1.0
942,649 + CCNA_00864 0.26 -1.7
942,652 - CCNA_00864 0.26 +0.4
942,652 - CCNA_00864 0.26 -0.8
942,652 - CCNA_00864 0.26 +0.7
942,652 - CCNA_00864 0.26 +1.0
942,687 + CCNA_00864 0.31 +0.2
942,704 + CCNA_00864 0.33 -3.2
942,750 - CCNA_00864 0.39 +0.8
942,759 - CCNA_00864 0.40 -0.5
942,837 + CCNA_00864 0.51 -2.6
942,837 + CCNA_00864 0.51 -1.0
942,845 - CCNA_00864 0.52 -0.9
942,850 - CCNA_00864 0.52 -1.1
942,859 + CCNA_00864 0.54 +0.1
942,867 - CCNA_00864 0.55 -3.0
942,867 - CCNA_00864 0.55 +1.3
942,893 + CCNA_00864 0.58 -1.2
942,983 - CCNA_00864 0.70 -1.6
942,993 - CCNA_00864 0.72 -1.5
943,000 + CCNA_00864 0.73 -1.8
943,024 + CCNA_00864 0.76 -2.7
943,046 + CCNA_00864 0.79 -0.9
943,047 + CCNA_00864 0.79 -1.5
943,056 + CCNA_00864 0.80 -0.9
943,056 + CCNA_00864 0.80 +0.5
943,056 + CCNA_00864 0.80 -2.0
943,056 + CCNA_00864 0.80 -0.9
943,057 - CCNA_00864 0.80 -0.3
943,059 - CCNA_00864 0.80 -1.3
943,064 - CCNA_00864 0.81 +0.7
943,064 - CCNA_00864 0.81 -0.5
943,064 - CCNA_00864 0.81 -1.8
943,111 - CCNA_00864 0.87 -0.0
943,126 + CCNA_00864 0.89 -1.8
943,134 - -0.1
943,187 + +1.0
943,208 + -2.1
943,208 + -0.6
943,216 - +0.6
943,229 + -0.9
943,229 - -2.6
943,237 - -0.1
943,272 - -0.5
943,299 - -0.5
943,351 + -2.0
943,351 + -2.3
943,359 - CCNA_00865 0.10 +0.3
943,450 + CCNA_00865 0.17 -1.9
943,458 - CCNA_00865 0.17 -2.3
943,458 - CCNA_00865 0.17 -1.0
943,483 + CCNA_00865 0.19 +0.8
943,506 - CCNA_00865 0.21 -1.3
943,545 - +1.3
943,559 - CCNA_00865 0.24 -1.0
943,559 - CCNA_00865 0.24 -0.7
943,591 - CCNA_00865 0.27 -0.1
943,608 - CCNA_00865 0.28 -1.9
943,655 + CCNA_00865 0.31 -0.4
943,690 - CCNA_00865 0.33 +0.3
943,702 + CCNA_00865 0.34 -0.1
943,702 - CCNA_00865 0.34 +1.4
943,723 - CCNA_00865 0.36 -2.3
943,802 + CCNA_00865 0.41 -2.3
943,802 + CCNA_00865 0.41 -2.1
943,802 + CCNA_00865 0.41 -0.0
943,807 + CCNA_00865 0.42 -0.9
943,834 + CCNA_00865 0.43 -1.0
943,842 - CCNA_00865 0.44 -0.5
943,856 + CCNA_00865 0.45 -0.9
943,858 + CCNA_00865 0.45 -0.4
943,863 + CCNA_00865 0.45 -0.8
943,863 + CCNA_00865 0.45 -1.0
943,868 + CCNA_00865 0.46 -0.4
943,873 + CCNA_00865 0.46 -1.6
943,876 - CCNA_00865 0.46 -0.1
943,904 + CCNA_00865 0.48 +1.1
943,921 + CCNA_00865 0.49 -1.5
943,922 - CCNA_00865 0.50 -0.7
943,926 + CCNA_00865 0.50 -0.3
944,003 + CCNA_00865 0.55 -1.7
944,003 + CCNA_00865 0.55 +0.1
944,086 - CCNA_00865 0.61 +0.7
944,126 + CCNA_00865 0.64 -0.3
944,134 - CCNA_00865 0.64 -1.8
944,134 - CCNA_00865 0.64 -1.2
944,141 + CCNA_00865 0.65 -0.3

Or see this region's nucleotide sequence