Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00772 and CCNA_00773 are separated by 218 nucleotides CCNA_00773 and CCNA_03937 are separated by 168 nucleotides CCNA_03937 and CCNA_00774 are separated by 26 nucleotides
CCNA_00772: CCNA_00772 - hypothetical protein, at 827,021 to 827,239
_00772
CCNA_00773: CCNA_00773 - carboxypeptidase S, at 827,458 to 828,936
_00773
CCNA_03937: CCNA_03937 - hypothetical protein, at 829,105 to 829,290
_03937
CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426
_00774
Position (kb) 827
828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 826.524 kb on + strand at 826.539 kb on - strand at 826.543 kb on + strand at 826.549 kb on - strand at 826.549 kb on - strand at 826.632 kb on + strand at 826.671 kb on - strand at 826.679 kb on + strand at 826.683 kb on - strand at 826.697 kb on - strand at 826.699 kb on + strand at 826.702 kb on - strand at 826.734 kb on - strand at 826.747 kb on - strand at 826.756 kb on - strand at 826.773 kb on + strand at 826.773 kb on + strand at 826.773 kb on + strand at 826.790 kb on + strand at 826.840 kb on + strand at 826.874 kb on - strand at 826.883 kb on - strand at 826.943 kb on + strand at 826.943 kb on + strand at 826.948 kb on + strand at 827.043 kb on + strand, within CCNA_00772 at 827.051 kb on - strand, within CCNA_00772 at 827.103 kb on + strand, within CCNA_00772 at 827.104 kb on + strand, within CCNA_00772 at 827.111 kb on - strand, within CCNA_00772 at 827.129 kb on + strand, within CCNA_00772 at 827.134 kb on + strand, within CCNA_00772 at 827.198 kb on - strand, within CCNA_00772 at 827.198 kb on - strand, within CCNA_00772 at 827.242 kb on - strand at 827.345 kb on - strand at 827.434 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.469 kb on + strand at 827.469 kb on - strand at 827.500 kb on + strand at 827.513 kb on - strand at 827.513 kb on - strand at 827.561 kb on - strand at 827.728 kb on - strand, within CCNA_00773 at 827.742 kb on + strand, within CCNA_00773 at 827.743 kb on + strand, within CCNA_00773 at 827.750 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.762 kb on + strand, within CCNA_00773 at 827.775 kb on - strand, within CCNA_00773 at 827.775 kb on - strand, within CCNA_00773 at 827.776 kb on - strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.779 kb on + strand, within CCNA_00773 at 827.779 kb on + strand, within CCNA_00773 at 827.787 kb on - strand, within CCNA_00773 at 827.787 kb on - strand, within CCNA_00773 at 827.787 kb on - strand, within CCNA_00773 at 827.795 kb on + strand, within CCNA_00773 at 827.872 kb on - strand, within CCNA_00773 at 827.887 kb on + strand, within CCNA_00773 at 827.889 kb on - strand, within CCNA_00773 at 827.895 kb on - strand, within CCNA_00773 at 827.895 kb on - strand, within CCNA_00773 at 827.899 kb on - strand, within CCNA_00773 at 827.917 kb on + strand, within CCNA_00773 at 827.925 kb on - strand, within CCNA_00773 at 827.925 kb on - strand, within CCNA_00773 at 827.925 kb on - strand, within CCNA_00773 at 827.935 kb on + strand, within CCNA_00773 at 827.948 kb on - strand, within CCNA_00773 at 827.971 kb on - strand, within CCNA_00773 at 827.979 kb on - strand, within CCNA_00773 at 827.981 kb on - strand, within CCNA_00773 at 828.022 kb on - strand, within CCNA_00773 at 828.087 kb on - strand, within CCNA_00773 at 828.096 kb on + strand, within CCNA_00773 at 828.110 kb on - strand, within CCNA_00773 at 828.163 kb on - strand, within CCNA_00773 at 828.183 kb on + strand, within CCNA_00773 at 828.237 kb on + strand, within CCNA_00773 at 828.269 kb on + strand, within CCNA_00773 at 828.269 kb on + strand, within CCNA_00773 at 828.274 kb on + strand, within CCNA_00773 at 828.277 kb on - strand, within CCNA_00773 at 828.277 kb on - strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.289 kb on + strand, within CCNA_00773 at 828.323 kb on + strand, within CCNA_00773 at 828.332 kb on - strand, within CCNA_00773 at 828.354 kb on + strand, within CCNA_00773 at 828.372 kb on - strand, within CCNA_00773 at 828.382 kb on + strand, within CCNA_00773 at 828.405 kb on - strand, within CCNA_00773 at 828.409 kb on - strand, within CCNA_00773 at 828.411 kb on + strand, within CCNA_00773 at 828.419 kb on - strand, within CCNA_00773 at 828.432 kb on + strand, within CCNA_00773 at 828.434 kb on - strand, within CCNA_00773 at 828.440 kb on - strand, within CCNA_00773 at 828.463 kb on + strand, within CCNA_00773 at 828.466 kb on - strand, within CCNA_00773 at 828.468 kb on + strand, within CCNA_00773 at 828.471 kb on - strand, within CCNA_00773 at 828.474 kb on - strand, within CCNA_00773 at 828.490 kb on + strand, within CCNA_00773 at 828.500 kb on - strand, within CCNA_00773 at 828.516 kb on + strand, within CCNA_00773 at 828.580 kb on - strand, within CCNA_00773 at 828.588 kb on + strand, within CCNA_00773 at 828.590 kb on - strand, within CCNA_00773 at 828.594 kb on + strand, within CCNA_00773 at 828.602 kb on - strand, within CCNA_00773 at 828.602 kb on - strand, within CCNA_00773 at 828.602 kb on - strand, within CCNA_00773 at 828.668 kb on + strand, within CCNA_00773 at 828.689 kb on + strand, within CCNA_00773 at 828.694 kb on + strand, within CCNA_00773 at 828.702 kb on - strand, within CCNA_00773 at 828.737 kb on + strand, within CCNA_00773 at 828.744 kb on + strand, within CCNA_00773 at 828.785 kb on - strand, within CCNA_00773 at 828.833 kb on + strand at 828.833 kb on + strand at 828.851 kb on + strand at 828.851 kb on + strand at 828.864 kb on + strand at 828.896 kb on + strand at 828.904 kb on - strand at 828.904 kb on - strand at 828.920 kb on - strand at 828.931 kb on + strand at 828.939 kb on - strand at 829.001 kb on + strand at 829.001 kb on + strand at 829.001 kb on + strand at 829.009 kb on + strand at 829.009 kb on - strand at 829.009 kb on - strand at 829.009 kb on - strand at 829.017 kb on - strand at 829.022 kb on - strand at 829.061 kb on - strand at 829.126 kb on - strand, within CCNA_03937 at 829.161 kb on + strand, within CCNA_03937 at 829.162 kb on + strand, within CCNA_03937 at 829.162 kb on + strand, within CCNA_03937 at 829.170 kb on - strand, within CCNA_03937 at 829.209 kb on + strand, within CCNA_03937 at 829.217 kb on - strand, within CCNA_03937 at 829.217 kb on - strand, within CCNA_03937 at 829.217 kb on - strand, within CCNA_03937 at 829.219 kb on - strand, within CCNA_03937 at 829.229 kb on + strand, within CCNA_03937 at 829.257 kb on + strand, within CCNA_03937 at 829.344 kb on - strand at 829.344 kb on - strand at 829.354 kb on - strand at 829.463 kb on - strand, within CCNA_00774 at 829.473 kb on + strand, within CCNA_00774 at 829.473 kb on + strand, within CCNA_00774 at 829.481 kb on - strand, within CCNA_00774 at 829.481 kb on - strand, within CCNA_00774 at 829.481 kb on - strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.502 kb on - strand, within CCNA_00774 at 829.507 kb on - strand, within CCNA_00774 at 829.507 kb on - strand, within CCNA_00774 at 829.525 kb on - strand, within CCNA_00774 at 829.547 kb on - strand, within CCNA_00774 at 829.569 kb on + strand, within CCNA_00774 at 829.593 kb on - strand, within CCNA_00774 at 829.623 kb on + strand, within CCNA_00774 at 829.631 kb on - strand, within CCNA_00774 at 829.675 kb on + strand, within CCNA_00774 at 829.683 kb on + strand, within CCNA_00774 at 829.683 kb on - strand, within CCNA_00774 at 829.707 kb on + strand, within CCNA_00774 at 829.707 kb on + strand, within CCNA_00774 at 829.725 kb on + strand, within CCNA_00774 at 829.725 kb on + strand, within CCNA_00774 at 829.741 kb on + strand, within CCNA_00774 at 829.795 kb on - strand, within CCNA_00774 at 829.811 kb on + strand, within CCNA_00774 at 829.811 kb on + strand, within CCNA_00774 at 829.819 kb on - strand, within CCNA_00774 at 829.819 kb on - strand, within CCNA_00774 at 829.835 kb on - strand, within CCNA_00774 at 829.840 kb on - strand, within CCNA_00774 at 829.860 kb on + strand, within CCNA_00774 at 829.860 kb on + strand, within CCNA_00774 at 829.869 kb on - strand, within CCNA_00774 at 829.888 kb on + strand, within CCNA_00774 at 829.888 kb on + strand, within CCNA_00774 at 829.896 kb on - strand, within CCNA_00774 at 829.899 kb on + strand, within CCNA_00774 at 829.907 kb on - strand, within CCNA_00774
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 826,524 + -0.3 826,539 - -1.7 826,543 + +0.3 826,549 - -0.5 826,549 - +0.3 826,632 + +1.5 826,671 - -1.2 826,679 + +0.2 826,683 - +0.3 826,697 - +0.1 826,699 + +0.6 826,702 - -0.3 826,734 - -2.5 826,747 - +0.7 826,756 - -0.7 826,773 + +0.6 826,773 + +0.9 826,773 + -1.6 826,790 + +0.0 826,840 + -0.2 826,874 - -0.6 826,883 - +1.5 826,943 + +0.7 826,943 + -1.0 826,948 + +0.4 827,043 + CCNA_00772 0.10 -0.8 827,051 - CCNA_00772 0.14 +0.4 827,103 + CCNA_00772 0.37 -2.3 827,104 + CCNA_00772 0.38 -0.2 827,111 - CCNA_00772 0.41 -1.2 827,129 + CCNA_00772 0.49 +1.2 827,134 + CCNA_00772 0.52 +0.9 827,198 - CCNA_00772 0.81 +0.3 827,198 - CCNA_00772 0.81 -0.0 827,242 - -2.0 827,345 - +0.1 827,434 + -0.3 827,441 + -0.4 827,441 + -1.0 827,441 + -0.9 827,441 + -0.4 827,441 + -1.0 827,442 - -1.1 827,442 - -0.4 827,442 - -0.5 827,442 - +0.5 827,449 - +0.1 827,449 - -2.5 827,449 - +0.4 827,449 - -0.1 827,449 - -1.1 827,449 - +0.7 827,449 - -1.0 827,469 + -1.0 827,469 - -1.9 827,500 + -0.1 827,513 - -1.5 827,513 - -0.6 827,561 - -0.4 827,728 - CCNA_00773 0.18 -0.8 827,742 + CCNA_00773 0.19 +0.1 827,743 + CCNA_00773 0.19 +0.6 827,750 - CCNA_00773 0.20 +1.8 827,751 - CCNA_00773 0.20 +0.6 827,751 - CCNA_00773 0.20 -0.5 827,751 - CCNA_00773 0.20 -0.2 827,751 - CCNA_00773 0.20 -0.6 827,762 + CCNA_00773 0.21 +1.6 827,775 - CCNA_00773 0.21 -0.2 827,775 - CCNA_00773 0.21 +0.3 827,776 - CCNA_00773 0.22 +1.2 827,778 + CCNA_00773 0.22 +0.7 827,778 + CCNA_00773 0.22 +0.9 827,778 + CCNA_00773 0.22 +0.4 827,778 + CCNA_00773 0.22 -0.0 827,779 + CCNA_00773 0.22 +1.4 827,779 + CCNA_00773 0.22 +1.1 827,787 - CCNA_00773 0.22 -0.8 827,787 - CCNA_00773 0.22 -0.3 827,787 - CCNA_00773 0.22 -0.5 827,795 + CCNA_00773 0.23 -1.0 827,872 - CCNA_00773 0.28 -0.1 827,887 + CCNA_00773 0.29 +1.7 827,889 - CCNA_00773 0.29 +0.4 827,895 - CCNA_00773 0.30 +1.1 827,895 - CCNA_00773 0.30 +0.9 827,899 - CCNA_00773 0.30 +0.6 827,917 + CCNA_00773 0.31 +0.0 827,925 - CCNA_00773 0.32 +0.5 827,925 - CCNA_00773 0.32 -0.7 827,925 - CCNA_00773 0.32 -1.3 827,935 + CCNA_00773 0.32 +0.2 827,948 - CCNA_00773 0.33 -1.6 827,971 - CCNA_00773 0.35 -0.2 827,979 - CCNA_00773 0.35 +0.3 827,981 - CCNA_00773 0.35 -0.8 828,022 - CCNA_00773 0.38 -0.1 828,087 - CCNA_00773 0.43 -0.7 828,096 + CCNA_00773 0.43 -0.1 828,110 - CCNA_00773 0.44 -0.7 828,163 - CCNA_00773 0.48 -0.6 828,183 + CCNA_00773 0.49 +0.8 828,237 + CCNA_00773 0.53 -1.0 828,269 + CCNA_00773 0.55 -0.7 828,269 + CCNA_00773 0.55 +0.2 828,274 + CCNA_00773 0.55 -0.5 828,277 - CCNA_00773 0.55 +0.8 828,277 - CCNA_00773 0.55 +1.4 828,279 + CCNA_00773 0.56 -1.0 828,279 + CCNA_00773 0.56 +1.6 828,279 + CCNA_00773 0.56 +0.1 828,279 + CCNA_00773 0.56 -1.0 828,279 + CCNA_00773 0.56 -0.5 828,279 + CCNA_00773 0.56 -0.5 828,279 + CCNA_00773 0.56 -1.2 828,279 + CCNA_00773 0.56 -1.7 828,279 + CCNA_00773 0.56 +0.3 828,279 + CCNA_00773 0.56 -0.0 828,279 + CCNA_00773 0.56 -1.4 828,279 + CCNA_00773 0.56 -0.3 828,279 + CCNA_00773 0.56 +0.3 828,279 + CCNA_00773 0.56 -0.4 828,287 - CCNA_00773 0.56 +2.0 828,287 - CCNA_00773 0.56 +0.9 828,287 - CCNA_00773 0.56 -0.8 828,287 - CCNA_00773 0.56 +0.6 828,287 - CCNA_00773 0.56 -0.1 828,287 - CCNA_00773 0.56 +1.0 828,287 - +0.5 828,287 - CCNA_00773 0.56 +1.7 828,287 - CCNA_00773 0.56 -1.3 828,287 - CCNA_00773 0.56 -2.5 828,287 - CCNA_00773 0.56 -1.1 828,289 + CCNA_00773 0.56 +0.0 828,323 + CCNA_00773 0.58 -0.6 828,332 - CCNA_00773 0.59 +0.2 828,354 + CCNA_00773 0.61 +0.7 828,372 - CCNA_00773 0.62 -0.2 828,382 + CCNA_00773 0.62 -0.4 828,405 - CCNA_00773 0.64 -0.5 828,409 - CCNA_00773 0.64 +0.2 828,411 + CCNA_00773 0.64 +0.5 828,419 - CCNA_00773 0.65 +0.3 828,432 + CCNA_00773 0.66 -2.3 828,434 - CCNA_00773 0.66 -1.5 828,440 - CCNA_00773 0.66 -1.3 828,463 + CCNA_00773 0.68 -0.7 828,466 - CCNA_00773 0.68 -1.3 828,468 + CCNA_00773 0.68 -1.2 828,471 - CCNA_00773 0.68 -0.3 828,474 - CCNA_00773 0.69 -1.1 828,490 + CCNA_00773 0.70 -1.1 828,500 - CCNA_00773 0.70 -0.7 828,516 + CCNA_00773 0.72 -0.9 828,580 - CCNA_00773 0.76 -2.1 828,588 + CCNA_00773 0.76 -0.3 828,590 - CCNA_00773 0.77 -1.0 828,594 + CCNA_00773 0.77 +0.1 828,602 - CCNA_00773 0.77 -2.0 828,602 - CCNA_00773 0.77 +0.0 828,602 - CCNA_00773 0.77 -2.1 828,668 + CCNA_00773 0.82 -0.9 828,689 + CCNA_00773 0.83 -0.5 828,694 + CCNA_00773 0.84 +1.6 828,702 - CCNA_00773 0.84 -2.0 828,737 + CCNA_00773 0.86 +0.8 828,744 + CCNA_00773 0.87 -0.5 828,785 - CCNA_00773 0.90 -1.3 828,833 + +0.9 828,833 + +1.3 828,851 + +0.8 828,851 + +0.7 828,864 + +2.5 828,896 + -0.5 828,904 - +0.1 828,904 - -0.4 828,920 - +0.0 828,931 + +0.5 828,939 - -0.2 829,001 + -1.2 829,001 + -0.2 829,001 + +1.5 829,009 + -0.3 829,009 - -1.2 829,009 - -0.2 829,009 - -1.7 829,017 - -1.2 829,022 - +1.2 829,061 - +0.5 829,126 - CCNA_03937 0.11 -3.0 829,161 + CCNA_03937 0.30 -0.1 829,162 + CCNA_03937 0.31 +0.3 829,162 + CCNA_03937 0.31 -1.7 829,170 - CCNA_03937 0.35 -0.9 829,209 + CCNA_03937 0.56 -1.6 829,217 - CCNA_03937 0.60 +0.1 829,217 - CCNA_03937 0.60 -1.7 829,217 - CCNA_03937 0.60 -0.6 829,219 - CCNA_03937 0.61 +0.5 829,229 + CCNA_03937 0.67 +0.0 829,257 + CCNA_03937 0.82 -0.9 829,344 - +0.1 829,344 - +0.2 829,354 - +0.3 829,463 - CCNA_00774 0.13 -1.7 829,473 + CCNA_00774 0.14 +0.3 829,473 + CCNA_00774 0.14 -0.3 829,481 - CCNA_00774 0.15 +0.3 829,481 - CCNA_00774 0.15 -1.2 829,481 - CCNA_00774 0.15 -0.2 829,494 + CCNA_00774 0.16 +0.7 829,494 + CCNA_00774 0.16 +1.3 829,494 + CCNA_00774 0.16 -0.2 829,494 + CCNA_00774 0.16 -0.2 829,494 + CCNA_00774 0.16 -0.6 829,499 + CCNA_00774 0.16 +1.1 829,499 + CCNA_00774 0.16 +0.5 829,499 + CCNA_00774 0.16 -1.4 829,499 + CCNA_00774 0.16 +1.0 829,499 + CCNA_00774 0.16 +1.4 829,499 + CCNA_00774 0.16 -0.1 829,499 + CCNA_00774 0.16 -0.0 829,499 + CCNA_00774 0.16 -0.6 829,502 - CCNA_00774 0.17 +0.4 829,507 - CCNA_00774 0.17 -0.1 829,507 - CCNA_00774 0.17 -0.3 829,525 - CCNA_00774 0.19 -1.5 829,547 - CCNA_00774 0.21 -1.4 829,569 + CCNA_00774 0.23 +0.4 829,593 - CCNA_00774 0.25 +0.5 829,623 + CCNA_00774 0.28 -0.8 829,631 - CCNA_00774 0.28 +0.3 829,675 + CCNA_00774 0.32 +0.5 829,683 + CCNA_00774 0.33 +0.7 829,683 - CCNA_00774 0.33 -2.0 829,707 + CCNA_00774 0.35 -2.0 829,707 + CCNA_00774 0.35 -0.7 829,725 + CCNA_00774 0.37 +0.2 829,725 + CCNA_00774 0.37 -0.5 829,741 + CCNA_00774 0.38 +0.0 829,795 - CCNA_00774 0.43 -0.7 829,811 + CCNA_00774 0.45 +0.5 829,811 + CCNA_00774 0.45 +0.2 829,819 - CCNA_00774 0.45 -0.3 829,819 - CCNA_00774 0.45 +1.1 829,835 - CCNA_00774 0.47 +0.0 829,840 - CCNA_00774 0.47 +0.7 829,860 + CCNA_00774 0.49 +0.3 829,860 + CCNA_00774 0.49 -2.5 829,869 - CCNA_00774 0.50 -1.7 829,888 + CCNA_00774 0.51 +1.9 829,888 + CCNA_00774 0.51 +1.3 829,896 - CCNA_00774 0.52 +0.3 829,899 + CCNA_00774 0.52 -1.1 829,907 - CCNA_00774 0.53 -0.1
Or see this region's nucleotide sequence