Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18665 and BPHYT_RS18670 overlap by 8 nucleotides BPHYT_RS18670 and BPHYT_RS18675 overlap by 4 nucleotides
BPHYT_RS18665: BPHYT_RS18665 - GumN family protein, at 4,196,477 to 4,197,640
_RS18665
BPHYT_RS18670: BPHYT_RS18670 - peptide ABC transporter ATP-binding protein, at 4,197,633 to 4,198,652
_RS18670
BPHYT_RS18675: BPHYT_RS18675 - peptide ABC transporter ATP-binding protein, at 4,198,649 to 4,199,653
_RS18675
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4196.895 kb on + strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4197.105 kb on + strand, within BPHYT_RS18665 at 4197.105 kb on + strand, within BPHYT_RS18665 at 4197.262 kb on - strand, within BPHYT_RS18665 at 4197.262 kb on - strand, within BPHYT_RS18665 at 4197.291 kb on + strand, within BPHYT_RS18665 at 4197.292 kb on - strand, within BPHYT_RS18665 at 4197.292 kb on - strand, within BPHYT_RS18665 at 4197.415 kb on + strand, within BPHYT_RS18665 at 4197.415 kb on + strand, within BPHYT_RS18665 at 4197.497 kb on + strand, within BPHYT_RS18665 at 4197.512 kb on + strand, within BPHYT_RS18665 at 4197.512 kb on + strand, within BPHYT_RS18665 at 4197.931 kb on + strand, within BPHYT_RS18670 at 4197.932 kb on - strand, within BPHYT_RS18670 at 4197.932 kb on - strand, within BPHYT_RS18670 at 4197.932 kb on - strand, within BPHYT_RS18670 at 4197.994 kb on + strand, within BPHYT_RS18670 at 4197.994 kb on + strand, within BPHYT_RS18670 at 4197.995 kb on - strand, within BPHYT_RS18670 at 4197.995 kb on - strand, within BPHYT_RS18670 at 4198.157 kb on + strand, within BPHYT_RS18670 at 4198.157 kb on + strand, within BPHYT_RS18670 at 4198.158 kb on - strand, within BPHYT_RS18670 at 4198.158 kb on - strand, within BPHYT_RS18670 at 4198.570 kb on + strand at 4198.571 kb on - strand at 4198.571 kb on - strand at 4198.571 kb on - strand at 4198.725 kb on - strand at 4198.788 kb on + strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.917 kb on + strand, within BPHYT_RS18675 at 4198.917 kb on + strand, within BPHYT_RS18675 at 4198.980 kb on + strand, within BPHYT_RS18675 at 4198.981 kb on - strand, within BPHYT_RS18675 at 4198.981 kb on - strand, within BPHYT_RS18675 at 4199.346 kb on + strand, within BPHYT_RS18675 at 4199.642 kb on + strand at 4199.643 kb on - strand at 4199.647 kb on + strand at 4199.647 kb on + strand at 4199.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 4,196,895 + BPHYT_RS18665 0.36 +0.2 4,196,896 - BPHYT_RS18665 0.36 -5.4 4,196,896 - BPHYT_RS18665 0.36 -3.1 4,196,896 - BPHYT_RS18665 0.36 -1.5 4,196,896 - BPHYT_RS18665 0.36 -3.4 4,197,105 + BPHYT_RS18665 0.54 -2.1 4,197,105 + BPHYT_RS18665 0.54 +0.3 4,197,262 - BPHYT_RS18665 0.67 -1.6 4,197,262 - BPHYT_RS18665 0.67 -2.2 4,197,291 + BPHYT_RS18665 0.70 -3.2 4,197,292 - BPHYT_RS18665 0.70 -1.5 4,197,292 - BPHYT_RS18665 0.70 -4.6 4,197,415 + BPHYT_RS18665 0.81 -2.8 4,197,415 + BPHYT_RS18665 0.81 -3.7 4,197,497 + BPHYT_RS18665 0.88 -3.1 4,197,512 + BPHYT_RS18665 0.89 -3.9 4,197,512 + BPHYT_RS18665 0.89 -4.2 4,197,931 + BPHYT_RS18670 0.29 -2.7 4,197,932 - BPHYT_RS18670 0.29 -2.6 4,197,932 - BPHYT_RS18670 0.29 -0.3 4,197,932 - BPHYT_RS18670 0.29 -0.7 4,197,994 + BPHYT_RS18670 0.35 -2.4 4,197,994 + BPHYT_RS18670 0.35 -2.8 4,197,995 - BPHYT_RS18670 0.35 +0.4 4,197,995 - BPHYT_RS18670 0.35 -1.3 4,198,157 + BPHYT_RS18670 0.51 -4.3 4,198,157 + BPHYT_RS18670 0.51 -3.5 4,198,158 - BPHYT_RS18670 0.51 -0.6 4,198,158 - BPHYT_RS18670 0.51 -2.3 4,198,570 + -1.1 4,198,571 - +0.4 4,198,571 - +0.6 4,198,571 - +0.3 4,198,725 - -0.5 4,198,788 + BPHYT_RS18675 0.14 -2.9 4,198,789 - BPHYT_RS18675 0.14 +0.1 4,198,789 - BPHYT_RS18675 0.14 +0.3 4,198,789 - BPHYT_RS18675 0.14 -0.0 4,198,917 + BPHYT_RS18675 0.27 -2.0 4,198,917 + BPHYT_RS18675 0.27 -2.2 4,198,980 + BPHYT_RS18675 0.33 -2.0 4,198,981 - BPHYT_RS18675 0.33 +1.5 4,198,981 - BPHYT_RS18675 0.33 -0.1 4,199,346 + BPHYT_RS18675 0.69 -1.0 4,199,642 + -1.2 4,199,643 - +0.1 4,199,647 + -0.4 4,199,647 + -0.9 4,199,648 - -0.1
Or see this region's nucleotide sequence