Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12240

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12235 and BPHYT_RS12240 are separated by 90 nucleotidesBPHYT_RS12240 and BPHYT_RS12245 are separated by 221 nucleotides BPHYT_RS12235: BPHYT_RS12235 - DNA repair protein RadA, at 2,793,968 to 2,795,344 _RS12235 BPHYT_RS12240: BPHYT_RS12240 - alanine racemase, at 2,795,435 to 2,796,505 _RS12240 BPHYT_RS12245: BPHYT_RS12245 - major facilitator transporter, at 2,796,727 to 2,798,034 _RS12245 Position (kb) 2795 2796 2797Strain fitness (log2 ratio) -2 -1 0 1at 2794.603 kb on - strand, within BPHYT_RS12235at 2794.630 kb on - strand, within BPHYT_RS12235at 2794.987 kb on + strand, within BPHYT_RS12235at 2794.989 kb on + strand, within BPHYT_RS12235at 2794.990 kb on - strand, within BPHYT_RS12235at 2794.990 kb on - strand, within BPHYT_RS12235at 2794.990 kb on - strand, within BPHYT_RS12235at 2795.323 kb on - strandat 2795.436 kb on + strandat 2795.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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2,794,603 - BPHYT_RS12235 0.46 -1.3
2,794,630 - BPHYT_RS12235 0.48 -0.7
2,794,987 + BPHYT_RS12235 0.74 +0.3
2,794,989 + BPHYT_RS12235 0.74 -0.2
2,794,990 - BPHYT_RS12235 0.74 +1.4
2,794,990 - BPHYT_RS12235 0.74 -0.7
2,794,990 - BPHYT_RS12235 0.74 -0.5
2,795,323 - +0.2
2,795,436 + -1.8
2,795,437 - -0.5

Or see this region's nucleotide sequence