Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02675 and BPHYT_RS02680 are separated by 67 nucleotides BPHYT_RS02680 and BPHYT_RS02685 are separated by 22 nucleotides BPHYT_RS02685 and BPHYT_RS02690 are separated by 6 nucleotides BPHYT_RS02690 and BPHYT_RS02695 are separated by 4 nucleotides
BPHYT_RS02675: BPHYT_RS02675 - hypothetical protein, at 601,659 to 602,375
_RS02675
BPHYT_RS02680: BPHYT_RS02680 - cytochrome C oxidase subunit I, at 602,443 to 603,105
_RS02680
BPHYT_RS02685: BPHYT_RS02685 - cytochrome C oxidase subunit I, at 603,128 to 604,237
_RS02685
BPHYT_RS02690: BPHYT_RS02690 - protoheme IX farnesyltransferase, at 604,244 to 605,149
_RS02690
BPHYT_RS02695: BPHYT_RS02695 - photosynthetic protein synthase I, at 605,154 to 605,771
_RS02695
Position (kb) 603
604
605 Strain fitness (log2 ratio) -2
-1
0
1 at 602.277 kb on + strand, within BPHYT_RS02675 at 602.278 kb on - strand, within BPHYT_RS02675 at 602.278 kb on - strand, within BPHYT_RS02675 at 602.373 kb on + strand at 602.373 kb on + strand at 602.373 kb on + strand at 602.374 kb on - strand at 602.374 kb on - strand at 602.441 kb on + strand at 602.441 kb on + strand at 602.520 kb on + strand, within BPHYT_RS02680 at 602.520 kb on + strand, within BPHYT_RS02680 at 602.596 kb on + strand, within BPHYT_RS02680 at 602.597 kb on - strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.609 kb on - strand, within BPHYT_RS02680 at 602.609 kb on - strand, within BPHYT_RS02680 at 602.798 kb on - strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 603.114 kb on + strand at 603.115 kb on - strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.120 kb on + strand at 603.120 kb on + strand at 603.121 kb on - strand at 603.121 kb on - strand at 603.121 kb on - strand at 603.135 kb on + strand at 603.163 kb on + strand at 603.185 kb on + strand at 603.186 kb on - strand at 603.186 kb on - strand at 603.186 kb on - strand at 603.438 kb on - strand, within BPHYT_RS02685 at 603.499 kb on + strand, within BPHYT_RS02685 at 603.499 kb on + strand, within BPHYT_RS02685 at 603.499 kb on + strand, within BPHYT_RS02685 at 603.522 kb on + strand, within BPHYT_RS02685 at 603.522 kb on + strand, within BPHYT_RS02685 at 603.523 kb on - strand, within BPHYT_RS02685 at 603.523 kb on - strand, within BPHYT_RS02685 at 603.614 kb on - strand, within BPHYT_RS02685 at 603.648 kb on + strand, within BPHYT_RS02685 at 603.794 kb on + strand, within BPHYT_RS02685 at 603.980 kb on + strand, within BPHYT_RS02685 at 604.126 kb on + strand, within BPHYT_RS02685 at 604.163 kb on - strand at 604.184 kb on + strand at 604.186 kb on + strand at 604.186 kb on + strand at 604.187 kb on - strand at 604.293 kb on - strand at 604.293 kb on - strand at 604.293 kb on - strand at 604.580 kb on + strand, within BPHYT_RS02690 at 604.580 kb on + strand, within BPHYT_RS02690 at 604.581 kb on - strand, within BPHYT_RS02690 at 604.622 kb on - strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.647 kb on - strand, within BPHYT_RS02690 at 604.647 kb on - strand, within BPHYT_RS02690 at 604.648 kb on + strand, within BPHYT_RS02690 at 604.839 kb on - strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.900 kb on + strand, within BPHYT_RS02690 at 604.910 kb on + strand, within BPHYT_RS02690 at 604.910 kb on + strand, within BPHYT_RS02690 at 604.911 kb on - strand, within BPHYT_RS02690 at 604.973 kb on + strand, within BPHYT_RS02690 at 604.973 kb on + strand, within BPHYT_RS02690 at 604.974 kb on - strand, within BPHYT_RS02690 at 605.150 kb on + strand at 605.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 602,277 + BPHYT_RS02675 0.86 -1.3 602,278 - BPHYT_RS02675 0.86 -0.5 602,278 - BPHYT_RS02675 0.86 -0.6 602,373 + +0.7 602,373 + -0.6 602,373 + +0.5 602,374 - -0.2 602,374 - -0.2 602,441 + -1.8 602,441 + +0.5 602,520 + BPHYT_RS02680 0.12 -0.8 602,520 + BPHYT_RS02680 0.12 -0.6 602,596 + BPHYT_RS02680 0.23 -1.3 602,597 - BPHYT_RS02680 0.23 -1.0 602,608 + BPHYT_RS02680 0.25 -0.0 602,608 + BPHYT_RS02680 0.25 -0.3 602,608 + BPHYT_RS02680 0.25 -0.4 602,609 - BPHYT_RS02680 0.25 -0.7 602,609 - BPHYT_RS02680 0.25 -0.8 602,798 - BPHYT_RS02680 0.54 -1.0 602,995 + BPHYT_RS02680 0.83 -0.3 602,995 + BPHYT_RS02680 0.83 +0.1 602,995 + BPHYT_RS02680 0.83 -0.2 602,995 + BPHYT_RS02680 0.83 -1.0 602,995 + BPHYT_RS02680 0.83 -0.3 602,995 + BPHYT_RS02680 0.83 -0.1 602,996 - BPHYT_RS02680 0.83 -0.8 602,996 - BPHYT_RS02680 0.83 -1.8 602,996 - BPHYT_RS02680 0.83 -2.0 602,996 - BPHYT_RS02680 0.83 -1.2 603,114 + -0.3 603,115 - -0.5 603,116 + -0.8 603,116 + -0.2 603,116 + +0.0 603,116 + +0.1 603,116 + +0.3 603,117 - -0.6 603,117 - -0.7 603,117 - -0.6 603,117 - -0.5 603,117 - +0.0 603,117 - +0.1 603,120 + +0.0 603,120 + +0.1 603,121 - -0.4 603,121 - -2.2 603,121 - -0.9 603,135 + -1.9 603,163 + -0.7 603,185 + +1.5 603,186 - +0.3 603,186 - -0.8 603,186 - -0.6 603,438 - BPHYT_RS02685 0.28 -1.8 603,499 + BPHYT_RS02685 0.33 -0.7 603,499 + BPHYT_RS02685 0.33 -1.2 603,499 + BPHYT_RS02685 0.33 -1.3 603,522 + BPHYT_RS02685 0.35 -0.3 603,522 + BPHYT_RS02685 0.35 -0.7 603,523 - BPHYT_RS02685 0.36 -1.7 603,523 - BPHYT_RS02685 0.36 -0.2 603,614 - BPHYT_RS02685 0.44 -0.7 603,648 + BPHYT_RS02685 0.47 -1.1 603,794 + BPHYT_RS02685 0.60 -0.3 603,980 + BPHYT_RS02685 0.77 -0.4 604,126 + BPHYT_RS02685 0.90 -1.3 604,163 - -0.0 604,184 + +0.3 604,186 + -0.7 604,186 + -0.8 604,187 - -1.4 604,293 - -1.4 604,293 - -2.4 604,293 - -1.9 604,580 + BPHYT_RS02690 0.37 -0.3 604,580 + BPHYT_RS02690 0.37 -0.0 604,581 - BPHYT_RS02690 0.37 -1.8 604,622 - BPHYT_RS02690 0.42 +0.7 604,646 + BPHYT_RS02690 0.44 -1.1 604,646 + BPHYT_RS02690 0.44 -1.2 604,646 + BPHYT_RS02690 0.44 -0.9 604,647 - BPHYT_RS02690 0.44 -0.9 604,647 - BPHYT_RS02690 0.44 -1.3 604,648 + BPHYT_RS02690 0.45 -0.9 604,839 - BPHYT_RS02690 0.66 -1.6 604,886 + BPHYT_RS02690 0.71 -0.1 604,886 + BPHYT_RS02690 0.71 -0.9 604,886 + BPHYT_RS02690 0.71 -0.8 604,900 + BPHYT_RS02690 0.72 -1.1 604,910 + BPHYT_RS02690 0.74 +0.1 604,910 + BPHYT_RS02690 0.74 -0.3 604,911 - BPHYT_RS02690 0.74 -1.8 604,973 + BPHYT_RS02690 0.80 -1.9 604,973 + BPHYT_RS02690 0.80 -1.6 604,974 - BPHYT_RS02690 0.81 -1.1 605,150 + -0.3 605,151 - -0.5
Or see this region's nucleotide sequence