Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29145

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29140 and AO356_29145 are separated by 69 nucleotidesAO356_29145 and AO356_29150 are separated by 12 nucleotides AO356_29140: AO356_29140 - BNR domain-containing protein, at 6,775,108 to 6,776,211 _29140 AO356_29145: AO356_29145 - hypothetical protein, at 6,776,281 to 6,777,645 _29145 AO356_29150: AO356_29150 - hypothetical protein, at 6,777,658 to 6,779,337 _29150 Position (kb) 6776 6777 6778Strain fitness (log2 ratio) -2 -1 0 1 2at 6776.068 kb on + strand, within AO356_29140at 6776.169 kb on - strandat 6776.211 kb on + strandat 6776.216 kb on + strandat 6776.217 kb on - strandat 6776.351 kb on + strandat 6776.411 kb on + strandat 6776.455 kb on + strand, within AO356_29145at 6776.549 kb on + strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.634 kb on - strand, within AO356_29145at 6776.705 kb on + strand, within AO356_29145at 6776.706 kb on - strand, within AO356_29145at 6776.714 kb on + strand, within AO356_29145at 6776.714 kb on + strand, within AO356_29145at 6776.715 kb on - strand, within AO356_29145at 6776.715 kb on - strand, within AO356_29145at 6777.011 kb on + strand, within AO356_29145at 6777.080 kb on + strand, within AO356_29145at 6777.081 kb on - strand, within AO356_29145at 6777.213 kb on + strand, within AO356_29145at 6777.213 kb on + strand, within AO356_29145at 6777.214 kb on - strand, within AO356_29145at 6777.368 kb on + strand, within AO356_29145at 6777.398 kb on + strand, within AO356_29145at 6777.398 kb on + strand, within AO356_29145at 6777.449 kb on + strand, within AO356_29145at 6777.717 kb on - strandat 6777.717 kb on - strandat 6777.761 kb on + strandat 6777.762 kb on - strandat 6777.774 kb on - strandat 6777.774 kb on - strandat 6777.888 kb on - strand, within AO356_29150at 6777.951 kb on - strand, within AO356_29150at 6778.238 kb on + strand, within AO356_29150at 6778.238 kb on + strand, within AO356_29150at 6778.304 kb on + strand, within AO356_29150at 6778.358 kb on + strand, within AO356_29150at 6778.358 kb on + strand, within AO356_29150at 6778.587 kb on - strand, within AO356_29150at 6778.587 kb on - strand, within AO356_29150

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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6,776,068 + AO356_29140 0.87 +0.3
6,776,169 - -0.7
6,776,211 + +0.1
6,776,216 + -0.1
6,776,217 - -0.2
6,776,351 + +0.2
6,776,411 + -0.7
6,776,455 + AO356_29145 0.13 -0.3
6,776,549 + AO356_29145 0.20 -0.1
6,776,618 - AO356_29145 0.25 -1.2
6,776,618 - AO356_29145 0.25 -0.5
6,776,618 - AO356_29145 0.25 -0.3
6,776,618 - AO356_29145 0.25 -0.5
6,776,634 - AO356_29145 0.26 -0.3
6,776,705 + AO356_29145 0.31 +0.5
6,776,706 - AO356_29145 0.31 +1.8
6,776,714 + AO356_29145 0.32 +0.6
6,776,714 + AO356_29145 0.32 -0.5
6,776,715 - AO356_29145 0.32 +1.0
6,776,715 - AO356_29145 0.32 +0.3
6,777,011 + AO356_29145 0.53 -0.0
6,777,080 + AO356_29145 0.59 -1.2
6,777,081 - AO356_29145 0.59 -0.1
6,777,213 + AO356_29145 0.68 -0.1
6,777,213 + AO356_29145 0.68 -0.1
6,777,214 - AO356_29145 0.68 +0.0
6,777,368 + AO356_29145 0.80 -1.2
6,777,398 + AO356_29145 0.82 +0.4
6,777,398 + AO356_29145 0.82 -0.0
6,777,449 + AO356_29145 0.86 +0.6
6,777,717 - -0.2
6,777,717 - +1.0
6,777,761 + -0.2
6,777,762 - -0.2
6,777,774 - +2.6
6,777,774 - -2.1
6,777,888 - AO356_29150 0.14 +0.7
6,777,951 - AO356_29150 0.17 +0.5
6,778,238 + AO356_29150 0.35 +0.0
6,778,238 + AO356_29150 0.35 +0.4
6,778,304 + AO356_29150 0.38 -1.0
6,778,358 + AO356_29150 0.42 -0.1
6,778,358 + AO356_29150 0.42 +0.3
6,778,587 - AO356_29150 0.55 +0.7
6,778,587 - AO356_29150 0.55 +0.5

Or see this region's nucleotide sequence