Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12975

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12970 and AO356_12975 overlap by 1 nucleotidesAO356_12975 and AO356_12980 overlap by 4 nucleotides AO356_12970: AO356_12970 - hypothetical protein, at 2,951,634 to 2,952,752 _12970 AO356_12975: AO356_12975 - multidrug ABC transporter ATP-binding protein, at 2,952,752 to 2,955,478 _12975 AO356_12980: AO356_12980 - hemolysin secretion protein D, at 2,955,475 to 2,956,440 _12980 Position (kb) 2952 2953 2954 2955 2956Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2951.930 kb on + strand, within AO356_12970at 2951.956 kb on + strand, within AO356_12970at 2951.956 kb on + strand, within AO356_12970at 2951.957 kb on - strand, within AO356_12970at 2951.957 kb on - strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.313 kb on + strand, within AO356_12970at 2952.314 kb on - strand, within AO356_12970at 2952.314 kb on - strand, within AO356_12970at 2952.314 kb on - strand, within AO356_12970at 2952.349 kb on + strand, within AO356_12970at 2952.349 kb on + strand, within AO356_12970at 2952.402 kb on + strand, within AO356_12970at 2952.402 kb on + strand, within AO356_12970at 2952.402 kb on + strand, within AO356_12970at 2952.469 kb on + strand, within AO356_12970at 2952.469 kb on + strand, within AO356_12970at 2952.470 kb on - strand, within AO356_12970at 2952.470 kb on - strand, within AO356_12970at 2952.505 kb on + strand, within AO356_12970at 2952.641 kb on + strandat 2952.641 kb on + strandat 2952.642 kb on - strandat 2952.642 kb on - strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.643 kb on + strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.644 kb on - strandat 2952.836 kb on + strandat 2952.836 kb on + strandat 2952.836 kb on + strandat 2952.836 kb on + strandat 2952.836 kb on + strandat 2952.836 kb on + strandat 2952.837 kb on - strandat 2952.837 kb on - strandat 2952.837 kb on - strandat 2952.837 kb on - strandat 2952.837 kb on - strandat 2953.074 kb on + strand, within AO356_12975at 2953.074 kb on + strand, within AO356_12975at 2953.075 kb on - strand, within AO356_12975at 2953.075 kb on - strand, within AO356_12975at 2953.075 kb on - strand, within AO356_12975at 2953.185 kb on + strand, within AO356_12975at 2953.186 kb on - strand, within AO356_12975at 2953.198 kb on + strand, within AO356_12975at 2953.236 kb on + strand, within AO356_12975at 2953.236 kb on + strand, within AO356_12975at 2953.236 kb on + strand, within AO356_12975at 2953.237 kb on - strand, within AO356_12975at 2953.237 kb on - strand, within AO356_12975at 2953.237 kb on - strand, within AO356_12975at 2953.368 kb on + strand, within AO356_12975at 2953.369 kb on - strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.470 kb on + strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.471 kb on - strand, within AO356_12975at 2953.545 kb on + strand, within AO356_12975at 2953.546 kb on - strand, within AO356_12975at 2953.546 kb on - strand, within AO356_12975at 2953.571 kb on + strand, within AO356_12975at 2953.572 kb on - strand, within AO356_12975at 2953.572 kb on - strand, within AO356_12975at 2953.572 kb on - strand, within AO356_12975at 2953.657 kb on - strand, within AO356_12975at 2953.683 kb on + strand, within AO356_12975at 2953.683 kb on + strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2953.684 kb on - strand, within AO356_12975at 2954.062 kb on + strand, within AO356_12975at 2954.062 kb on + strand, within AO356_12975at 2954.063 kb on - strand, within AO356_12975at 2954.063 kb on - strand, within AO356_12975at 2954.409 kb on + strand, within AO356_12975at 2954.865 kb on + strand, within AO356_12975at 2954.865 kb on + strand, within AO356_12975at 2954.865 kb on + strand, within AO356_12975at 2954.865 kb on + strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.866 kb on - strand, within AO356_12975at 2954.918 kb on + strand, within AO356_12975at 2954.918 kb on + strand, within AO356_12975at 2954.918 kb on + strand, within AO356_12975at 2954.918 kb on + strand, within AO356_12975at 2954.918 kb on + strand, within AO356_12975at 2954.919 kb on - strand, within AO356_12975at 2954.919 kb on - strand, within AO356_12975at 2954.919 kb on - strand, within AO356_12975at 2954.919 kb on - strand, within AO356_12975at 2955.187 kb on - strand, within AO356_12975at 2955.187 kb on - strand, within AO356_12975at 2955.223 kb on + strandat 2955.224 kb on - strandat 2955.224 kb on - strandat 2955.275 kb on + strandat 2955.275 kb on + strandat 2955.276 kb on - strandat 2955.276 kb on - strandat 2955.276 kb on - strandat 2955.518 kb on + strandat 2955.519 kb on - strandat 2955.577 kb on + strand, within AO356_12980at 2955.577 kb on + strand, within AO356_12980at 2955.577 kb on + strand, within AO356_12980at 2955.577 kb on + strand, within AO356_12980at 2955.578 kb on - strand, within AO356_12980at 2955.578 kb on - strand, within AO356_12980at 2955.578 kb on - strand, within AO356_12980at 2955.758 kb on + strand, within AO356_12980at 2955.759 kb on - strand, within AO356_12980at 2955.759 kb on - strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.770 kb on + strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2955.771 kb on - strand, within AO356_12980at 2956.108 kb on + strand, within AO356_12980at 2956.108 kb on + strand, within AO356_12980at 2956.108 kb on + strand, within AO356_12980at 2956.108 kb on + strand, within AO356_12980at 2956.108 kb on + strand, within AO356_12980at 2956.108 kb on + strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.109 kb on - strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.210 kb on + strand, within AO356_12980at 2956.211 kb on - strand, within AO356_12980at 2956.211 kb on - strand, within AO356_12980at 2956.211 kb on - strand, within AO356_12980at 2956.211 kb on - strand, within AO356_12980at 2956.422 kb on + strandat 2956.422 kb on + strandat 2956.422 kb on + strandat 2956.422 kb on + strandat 2956.422 kb on + strandat 2956.422 kb on + strandat 2956.422 kb on + strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.423 kb on - strandat 2956.458 kb on + strandat 2956.458 kb on + strandat 2956.458 kb on + strandat 2956.459 kb on - strandat 2956.459 kb on - strandat 2956.460 kb on + strandat 2956.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,951,930 + AO356_12970 0.26 -0.6
2,951,956 + AO356_12970 0.29 -0.4
2,951,956 + AO356_12970 0.29 -0.7
2,951,957 - AO356_12970 0.29 -0.3
2,951,957 - AO356_12970 0.29 +0.2
2,952,313 + AO356_12970 0.61 +0.7
2,952,313 + AO356_12970 0.61 +1.4
2,952,313 + AO356_12970 0.61 +1.0
2,952,313 + AO356_12970 0.61 +0.5
2,952,313 + AO356_12970 0.61 +0.5
2,952,313 + AO356_12970 0.61 -0.4
2,952,313 + AO356_12970 0.61 +0.1
2,952,313 + AO356_12970 0.61 +0.5
2,952,313 + AO356_12970 0.61 -0.3
2,952,314 - AO356_12970 0.61 -0.7
2,952,314 - AO356_12970 0.61 -0.8
2,952,314 - AO356_12970 0.61 +0.3
2,952,349 + AO356_12970 0.64 -0.6
2,952,349 + AO356_12970 0.64 -0.2
2,952,402 + AO356_12970 0.69 -0.3
2,952,402 + AO356_12970 0.69 -0.9
2,952,402 + AO356_12970 0.69 -0.1
2,952,469 + AO356_12970 0.75 -0.2
2,952,469 + AO356_12970 0.75 -0.1
2,952,470 - AO356_12970 0.75 -1.0
2,952,470 - AO356_12970 0.75 -0.6
2,952,505 + AO356_12970 0.78 -0.3
2,952,641 + +1.0
2,952,641 + +1.2
2,952,642 - -0.5
2,952,642 - -0.1
2,952,643 + -0.2
2,952,643 + -0.6
2,952,643 + -0.1
2,952,643 + -0.4
2,952,643 + +0.8
2,952,643 + -2.2
2,952,643 + -0.4
2,952,643 + -0.1
2,952,643 + -0.2
2,952,643 + +0.2
2,952,644 - +0.7
2,952,644 - -0.5
2,952,644 - +0.1
2,952,644 - -0.9
2,952,644 - -0.3
2,952,644 - -1.1
2,952,644 - -0.4
2,952,644 - -0.4
2,952,644 - -0.2
2,952,644 - +0.8
2,952,644 - -0.1
2,952,644 - +0.3
2,952,644 - +0.4
2,952,644 - +0.4
2,952,644 - -0.6
2,952,644 - -0.1
2,952,644 - +0.2
2,952,644 - +1.1
2,952,836 + -0.2
2,952,836 + +0.0
2,952,836 + -2.0
2,952,836 + +0.2
2,952,836 + +0.9
2,952,836 + -1.4
2,952,837 - +0.1
2,952,837 - -0.3
2,952,837 - +1.5
2,952,837 - -0.9
2,952,837 - -0.5
2,953,074 + AO356_12975 0.12 +0.4
2,953,074 + AO356_12975 0.12 -0.6
2,953,075 - AO356_12975 0.12 +0.7
2,953,075 - AO356_12975 0.12 -0.6
2,953,075 - AO356_12975 0.12 +0.5
2,953,185 + AO356_12975 0.16 +0.0
2,953,186 - AO356_12975 0.16 -0.2
2,953,198 + AO356_12975 0.16 -1.9
2,953,236 + AO356_12975 0.18 +0.4
2,953,236 + AO356_12975 0.18 +0.3
2,953,236 + AO356_12975 0.18 -0.6
2,953,237 - AO356_12975 0.18 -0.4
2,953,237 - AO356_12975 0.18 -0.6
2,953,237 - AO356_12975 0.18 +0.9
2,953,368 + AO356_12975 0.23 +0.0
2,953,369 - AO356_12975 0.23 -0.3
2,953,470 + AO356_12975 0.26 +1.3
2,953,470 + AO356_12975 0.26 -1.9
2,953,470 + AO356_12975 0.26 +0.0
2,953,470 + AO356_12975 0.26 -0.4
2,953,470 + AO356_12975 0.26 +1.5
2,953,470 + AO356_12975 0.26 +0.0
2,953,470 + AO356_12975 0.26 +0.1
2,953,470 + AO356_12975 0.26 +0.5
2,953,470 + AO356_12975 0.26 -0.2
2,953,471 - AO356_12975 0.26 -1.6
2,953,471 - AO356_12975 0.26 -0.6
2,953,471 - AO356_12975 0.26 -0.1
2,953,471 - AO356_12975 0.26 +0.1
2,953,471 - AO356_12975 0.26 +0.3
2,953,471 - AO356_12975 0.26 -0.5
2,953,471 - AO356_12975 0.26 +0.7
2,953,471 - AO356_12975 0.26 -0.3
2,953,471 - AO356_12975 0.26 +1.4
2,953,471 - AO356_12975 0.26 -0.3
2,953,545 + AO356_12975 0.29 +1.1
2,953,546 - AO356_12975 0.29 -1.1
2,953,546 - AO356_12975 0.29 -0.0
2,953,571 + AO356_12975 0.30 +0.2
2,953,572 - AO356_12975 0.30 -0.8
2,953,572 - AO356_12975 0.30 -0.3
2,953,572 - AO356_12975 0.30 +0.1
2,953,657 - AO356_12975 0.33 +0.4
2,953,683 + AO356_12975 0.34 +0.4
2,953,683 + AO356_12975 0.34 -0.2
2,953,684 - AO356_12975 0.34 -0.1
2,953,684 - AO356_12975 0.34 +0.1
2,953,684 - AO356_12975 0.34 +0.3
2,953,684 - AO356_12975 0.34 +0.0
2,953,684 - AO356_12975 0.34 +0.4
2,953,684 - AO356_12975 0.34 +1.7
2,953,684 - AO356_12975 0.34 -0.0
2,953,684 - AO356_12975 0.34 +0.5
2,954,062 + AO356_12975 0.48 +0.5
2,954,062 + AO356_12975 0.48 -1.3
2,954,063 - AO356_12975 0.48 -0.7
2,954,063 - AO356_12975 0.48 -0.9
2,954,409 + AO356_12975 0.61 +0.2
2,954,865 + AO356_12975 0.77 +0.8
2,954,865 + AO356_12975 0.77 -0.5
2,954,865 + AO356_12975 0.77 -0.1
2,954,865 + AO356_12975 0.77 -0.3
2,954,866 - AO356_12975 0.78 +0.7
2,954,866 - AO356_12975 0.78 +1.3
2,954,866 - AO356_12975 0.78 -0.2
2,954,866 - AO356_12975 0.78 -0.4
2,954,866 - AO356_12975 0.78 +1.3
2,954,866 - AO356_12975 0.78 +0.8
2,954,866 - AO356_12975 0.78 +0.4
2,954,866 - AO356_12975 0.78 +0.1
2,954,918 + AO356_12975 0.79 +0.8
2,954,918 + AO356_12975 0.79 +0.3
2,954,918 + AO356_12975 0.79 -0.9
2,954,918 + AO356_12975 0.79 -0.2
2,954,918 + AO356_12975 0.79 -0.5
2,954,919 - AO356_12975 0.79 +0.8
2,954,919 - AO356_12975 0.79 -0.3
2,954,919 - AO356_12975 0.79 +0.3
2,954,919 - AO356_12975 0.79 -0.7
2,955,187 - AO356_12975 0.89 +1.6
2,955,187 - AO356_12975 0.89 +1.1
2,955,223 + -0.6
2,955,224 - -0.1
2,955,224 - -0.1
2,955,275 + -0.9
2,955,275 + -0.9
2,955,276 - -0.2
2,955,276 - +1.4
2,955,276 - -0.1
2,955,518 + -0.5
2,955,519 - +0.9
2,955,577 + AO356_12980 0.11 +0.4
2,955,577 + AO356_12980 0.11 +0.2
2,955,577 + AO356_12980 0.11 -0.6
2,955,577 + AO356_12980 0.11 +0.3
2,955,578 - AO356_12980 0.11 +1.1
2,955,578 - AO356_12980 0.11 -0.3
2,955,578 - AO356_12980 0.11 -0.3
2,955,758 + AO356_12980 0.29 -1.1
2,955,759 - AO356_12980 0.29 +0.0
2,955,759 - AO356_12980 0.29 +0.2
2,955,770 + AO356_12980 0.31 -0.2
2,955,770 + AO356_12980 0.31 -0.1
2,955,770 + AO356_12980 0.31 -1.4
2,955,770 + AO356_12980 0.31 -0.7
2,955,770 + AO356_12980 0.31 +0.6
2,955,770 + AO356_12980 0.31 -1.1
2,955,770 + AO356_12980 0.31 -1.1
2,955,770 + AO356_12980 0.31 -0.9
2,955,770 + AO356_12980 0.31 +0.6
2,955,771 - AO356_12980 0.31 +1.5
2,955,771 - AO356_12980 0.31 -0.4
2,955,771 - AO356_12980 0.31 +1.1
2,955,771 - AO356_12980 0.31 +0.5
2,955,771 - AO356_12980 0.31 -1.3
2,955,771 - AO356_12980 0.31 -0.1
2,955,771 - AO356_12980 0.31 +0.8
2,955,771 - AO356_12980 0.31 +0.7
2,956,108 + AO356_12980 0.66 -1.2
2,956,108 + AO356_12980 0.66 +2.1
2,956,108 + AO356_12980 0.66 -0.2
2,956,108 + AO356_12980 0.66 +0.6
2,956,108 + AO356_12980 0.66 -0.3
2,956,108 + AO356_12980 0.66 -0.1
2,956,109 - AO356_12980 0.66 -0.1
2,956,109 - AO356_12980 0.66 +0.0
2,956,109 - AO356_12980 0.66 +0.3
2,956,109 - AO356_12980 0.66 +0.0
2,956,109 - AO356_12980 0.66 +0.6
2,956,109 - AO356_12980 0.66 +0.8
2,956,109 - AO356_12980 0.66 -0.3
2,956,109 - AO356_12980 0.66 -0.3
2,956,109 - AO356_12980 0.66 -0.7
2,956,109 - AO356_12980 0.66 +0.8
2,956,109 - AO356_12980 0.66 -0.3
2,956,109 - AO356_12980 0.66 +0.4
2,956,109 - AO356_12980 0.66 -0.1
2,956,109 - AO356_12980 0.66 +0.5
2,956,109 - AO356_12980 0.66 +0.5
2,956,210 + AO356_12980 0.76 -0.7
2,956,210 + AO356_12980 0.76 +0.9
2,956,210 + AO356_12980 0.76 +0.1
2,956,210 + AO356_12980 0.76 +1.3
2,956,210 + AO356_12980 0.76 -0.0
2,956,210 + AO356_12980 0.76 -0.2
2,956,210 + AO356_12980 0.76 -0.2
2,956,211 - AO356_12980 0.76 +0.5
2,956,211 - AO356_12980 0.76 +0.1
2,956,211 - AO356_12980 0.76 +0.3
2,956,211 - AO356_12980 0.76 -0.4
2,956,422 + -0.8
2,956,422 + -2.8
2,956,422 + +0.1
2,956,422 + +0.5
2,956,422 + +0.5
2,956,422 + -1.9
2,956,422 + -0.9
2,956,423 - +0.4
2,956,423 - -0.8
2,956,423 - +1.1
2,956,423 - -0.5
2,956,423 - -1.5
2,956,423 - +1.0
2,956,423 - +0.2
2,956,423 - +0.4
2,956,423 - -1.6
2,956,423 - -0.1
2,956,423 - -0.3
2,956,423 - -0.4
2,956,423 - -0.3
2,956,458 + -0.9
2,956,458 + -1.2
2,956,458 + +0.1
2,956,459 - +0.7
2,956,459 - -0.3
2,956,460 + +0.2
2,956,461 - -0.2

Or see this region's nucleotide sequence