Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06500

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06495 and AO356_06500 are separated by 169 nucleotidesAO356_06500 and AO356_06505 are separated by 56 nucleotides AO356_06495: AO356_06495 - alpha/beta hydrolase, at 1,437,882 to 1,438,727 _06495 AO356_06500: AO356_06500 - antibiotic biosynthesis monooxygenase, at 1,438,897 to 1,439,274 _06500 AO356_06505: AO356_06505 - pyridine nucleotide-disulfide oxidoreductase, at 1,439,331 to 1,440,224 _06505 Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -2 -1 0 1at 1438.123 kb on + strand, within AO356_06495at 1438.123 kb on + strand, within AO356_06495at 1438.123 kb on + strand, within AO356_06495at 1438.123 kb on + strand, within AO356_06495at 1438.124 kb on - strand, within AO356_06495at 1438.124 kb on - strand, within AO356_06495at 1438.124 kb on - strand, within AO356_06495at 1438.129 kb on - strand, within AO356_06495at 1438.129 kb on - strand, within AO356_06495at 1438.164 kb on + strand, within AO356_06495at 1438.164 kb on + strand, within AO356_06495at 1438.164 kb on + strand, within AO356_06495at 1438.164 kb on + strand, within AO356_06495at 1438.165 kb on - strand, within AO356_06495at 1438.291 kb on + strand, within AO356_06495at 1438.291 kb on + strand, within AO356_06495at 1438.291 kb on + strand, within AO356_06495at 1438.291 kb on + strand, within AO356_06495at 1438.291 kb on + strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.292 kb on - strand, within AO356_06495at 1438.408 kb on + strand, within AO356_06495at 1438.408 kb on + strand, within AO356_06495at 1438.408 kb on + strand, within AO356_06495at 1438.409 kb on - strand, within AO356_06495at 1438.409 kb on - strand, within AO356_06495at 1438.688 kb on + strandat 1438.864 kb on + strandat 1438.887 kb on - strandat 1438.887 kb on - strandat 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.191 kb on + strand, within AO356_06500at 1439.191 kb on + strand, within AO356_06500at 1439.191 kb on + strand, within AO356_06500at 1439.192 kb on - strand, within AO356_06500at 1439.192 kb on - strand, within AO356_06500at 1439.434 kb on + strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.750 kb on - strand, within AO356_06505at 1439.761 kb on + strand, within AO356_06505at 1439.761 kb on + strand, within AO356_06505at 1439.761 kb on + strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.830 kb on + strand, within AO356_06505at 1439.830 kb on + strand, within AO356_06505at 1439.905 kb on + strand, within AO356_06505at 1439.905 kb on + strand, within AO356_06505at 1439.905 kb on + strand, within AO356_06505at 1439.906 kb on - strand, within AO356_06505at 1439.906 kb on - strand, within AO356_06505at 1439.906 kb on - strand, within AO356_06505at 1440.271 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,438,123 + AO356_06495 0.28 -0.1
1,438,123 + AO356_06495 0.28 +0.3
1,438,123 + AO356_06495 0.28 +0.8
1,438,123 + AO356_06495 0.28 -0.5
1,438,124 - AO356_06495 0.29 -0.5
1,438,124 - AO356_06495 0.29 -0.2
1,438,124 - AO356_06495 0.29 +0.0
1,438,129 - AO356_06495 0.29 +0.3
1,438,129 - AO356_06495 0.29 -0.5
1,438,164 + AO356_06495 0.33 -0.9
1,438,164 + AO356_06495 0.33 +1.0
1,438,164 + AO356_06495 0.33 +0.5
1,438,164 + AO356_06495 0.33 -0.3
1,438,165 - AO356_06495 0.33 -0.3
1,438,291 + AO356_06495 0.48 -0.0
1,438,291 + AO356_06495 0.48 +0.4
1,438,291 + AO356_06495 0.48 +0.3
1,438,291 + AO356_06495 0.48 -0.0
1,438,291 + AO356_06495 0.48 +0.3
1,438,292 - AO356_06495 0.48 +0.4
1,438,292 - AO356_06495 0.48 +0.4
1,438,292 - AO356_06495 0.48 +0.5
1,438,292 - AO356_06495 0.48 +0.8
1,438,292 - AO356_06495 0.48 +1.1
1,438,292 - AO356_06495 0.48 -0.2
1,438,292 - AO356_06495 0.48 +0.1
1,438,292 - AO356_06495 0.48 -0.2
1,438,408 + AO356_06495 0.62 +0.1
1,438,408 + AO356_06495 0.62 +1.4
1,438,408 + AO356_06495 0.62 +0.4
1,438,409 - AO356_06495 0.62 -0.6
1,438,409 - AO356_06495 0.62 +1.1
1,438,688 + -0.1
1,438,864 + +0.4
1,438,887 - +0.0
1,438,887 - +0.1
1,439,042 + AO356_06500 0.38 +0.8
1,439,042 + AO356_06500 0.38 +1.4
1,439,042 + AO356_06500 0.38 +0.3
1,439,042 + AO356_06500 0.38 -1.3
1,439,042 + AO356_06500 0.38 -1.0
1,439,042 + AO356_06500 0.38 +1.0
1,439,042 + AO356_06500 0.38 +0.6
1,439,042 + AO356_06500 0.38 +0.7
1,439,042 + AO356_06500 0.38 +0.1
1,439,043 - AO356_06500 0.39 +0.2
1,439,043 - AO356_06500 0.39 +1.1
1,439,043 - AO356_06500 0.39 +0.8
1,439,043 - AO356_06500 0.39 +0.4
1,439,043 - AO356_06500 0.39 +0.3
1,439,043 - AO356_06500 0.39 +0.8
1,439,043 - AO356_06500 0.39 -0.1
1,439,043 - AO356_06500 0.39 -0.3
1,439,043 - AO356_06500 0.39 +1.3
1,439,043 - AO356_06500 0.39 -0.3
1,439,043 - AO356_06500 0.39 +1.3
1,439,179 + AO356_06500 0.75 -0.1
1,439,179 + AO356_06500 0.75 +0.3
1,439,179 + AO356_06500 0.75 -0.6
1,439,179 + AO356_06500 0.75 +0.8
1,439,180 - AO356_06500 0.75 +0.3
1,439,180 - AO356_06500 0.75 +0.8
1,439,180 - AO356_06500 0.75 +0.3
1,439,180 - AO356_06500 0.75 +0.4
1,439,180 - AO356_06500 0.75 +0.6
1,439,187 + AO356_06500 0.77 -0.2
1,439,187 + AO356_06500 0.77 +0.3
1,439,187 + AO356_06500 0.77 +0.0
1,439,187 + AO356_06500 0.77 +1.4
1,439,188 - AO356_06500 0.77 +1.2
1,439,188 - AO356_06500 0.77 +1.0
1,439,188 - AO356_06500 0.77 -0.3
1,439,188 - AO356_06500 0.77 +0.1
1,439,188 - AO356_06500 0.77 +0.5
1,439,188 - AO356_06500 0.77 -0.2
1,439,188 - AO356_06500 0.77 -0.3
1,439,191 + AO356_06500 0.78 +1.5
1,439,191 + AO356_06500 0.78 -0.1
1,439,191 + AO356_06500 0.78 +0.4
1,439,192 - AO356_06500 0.78 -0.6
1,439,192 - AO356_06500 0.78 -0.5
1,439,434 + AO356_06505 0.12 -0.6
1,439,435 - AO356_06505 0.12 -0.3
1,439,435 - AO356_06505 0.12 +0.4
1,439,435 - AO356_06505 0.12 +0.2
1,439,435 - AO356_06505 0.12 +0.0
1,439,435 - AO356_06505 0.12 +0.4
1,439,750 - AO356_06505 0.47 +0.3
1,439,761 + AO356_06505 0.48 +0.3
1,439,761 + AO356_06505 0.48 +1.5
1,439,761 + AO356_06505 0.48 -0.4
1,439,762 - AO356_06505 0.48 +1.3
1,439,762 - AO356_06505 0.48 +0.9
1,439,762 - AO356_06505 0.48 -0.3
1,439,762 - AO356_06505 0.48 -0.3
1,439,762 - AO356_06505 0.48 -0.2
1,439,762 - AO356_06505 0.48 +1.5
1,439,762 - AO356_06505 0.48 +0.9
1,439,762 - AO356_06505 0.48 +0.7
1,439,762 - AO356_06505 0.48 +0.5
1,439,830 + AO356_06505 0.56 -0.3
1,439,830 + AO356_06505 0.56 -2.1
1,439,905 + AO356_06505 0.64 +0.2
1,439,905 + AO356_06505 0.64 -0.5
1,439,905 + AO356_06505 0.64 -1.3
1,439,906 - AO356_06505 0.64 -0.4
1,439,906 - AO356_06505 0.64 -0.2
1,439,906 - AO356_06505 0.64 +0.5
1,440,271 + +0.7

Or see this region's nucleotide sequence