Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03945

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03935 and AO356_03940 overlap by 4 nucleotidesAO356_03940 and AO356_03945 are separated by 4 nucleotidesAO356_03945 and AO356_03950 overlap by 4 nucleotidesAO356_03950 and AO356_03955 overlap by 4 nucleotides AO356_03935: AO356_03935 - glycosyl transferase family 2, at 875,542 to 879,048 _03935 AO356_03940: AO356_03940 - methyltransferase type 12, at 879,045 to 879,797 _03940 AO356_03945: AO356_03945 - phytanoyl-CoA dioxygenase, at 879,802 to 880,581 _03945 AO356_03950: AO356_03950 - acyltransferase, at 880,578 to 881,135 _03950 AO356_03955: AO356_03955 - hypothetical protein, at 881,132 to 882,112 _03955 Position (kb) 879 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 878.811 kb on - strandat 878.912 kb on + strandat 878.912 kb on + strandat 878.912 kb on + strandat 878.912 kb on + strandat 878.912 kb on + strandat 878.913 kb on - strandat 878.913 kb on - strandat 878.913 kb on - strandat 878.913 kb on - strandat 878.913 kb on - strandat 878.913 kb on - strandat 878.951 kb on + strandat 878.951 kb on + strandat 878.952 kb on - strandat 878.952 kb on - strandat 878.966 kb on - strandat 879.005 kb on + strandat 879.005 kb on + strandat 879.005 kb on + strandat 879.005 kb on + strandat 879.005 kb on + strandat 879.005 kb on + strandat 879.005 kb on + strandat 879.006 kb on - strandat 879.008 kb on + strandat 879.008 kb on + strandat 879.008 kb on + strandat 879.009 kb on - strandat 879.009 kb on - strandat 879.009 kb on - strandat 879.048 kb on + strandat 879.048 kb on + strandat 879.048 kb on + strandat 879.048 kb on + strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.049 kb on - strandat 879.112 kb on + strandat 879.252 kb on + strand, within AO356_03940at 879.253 kb on - strand, within AO356_03940at 879.253 kb on - strand, within AO356_03940at 879.253 kb on - strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.280 kb on + strand, within AO356_03940at 879.281 kb on - strand, within AO356_03940at 879.281 kb on - strand, within AO356_03940at 879.527 kb on + strand, within AO356_03940at 879.527 kb on + strand, within AO356_03940at 879.528 kb on - strand, within AO356_03940at 879.528 kb on - strand, within AO356_03940at 879.528 kb on - strand, within AO356_03940at 879.528 kb on - strand, within AO356_03940at 879.712 kb on + strand, within AO356_03940at 879.712 kb on + strand, within AO356_03940at 879.712 kb on + strand, within AO356_03940at 879.713 kb on - strand, within AO356_03940at 879.713 kb on - strand, within AO356_03940at 879.745 kb on + strandat 879.746 kb on - strandat 879.746 kb on - strandat 879.781 kb on + strandat 879.781 kb on + strandat 879.781 kb on + strandat 879.781 kb on + strandat 879.781 kb on + strandat 879.782 kb on - strandat 879.789 kb on + strandat 879.789 kb on + strandat 879.789 kb on + strandat 879.789 kb on + strandat 879.789 kb on + strandat 879.822 kb on - strandat 879.822 kb on - strandat 879.878 kb on + strandat 879.878 kb on + strandat 879.878 kb on + strandat 879.879 kb on - strandat 879.879 kb on - strandat 879.947 kb on + strand, within AO356_03945at 879.947 kb on + strand, within AO356_03945at 879.968 kb on + strand, within AO356_03945at 879.969 kb on - strand, within AO356_03945at 880.014 kb on + strand, within AO356_03945at 880.041 kb on + strand, within AO356_03945at 880.042 kb on - strand, within AO356_03945at 880.042 kb on - strand, within AO356_03945at 880.058 kb on + strand, within AO356_03945at 880.058 kb on + strand, within AO356_03945at 880.192 kb on + strand, within AO356_03945at 880.192 kb on + strand, within AO356_03945at 880.192 kb on + strand, within AO356_03945at 880.193 kb on - strand, within AO356_03945at 880.255 kb on - strand, within AO356_03945at 880.262 kb on + strand, within AO356_03945at 880.262 kb on + strand, within AO356_03945at 880.262 kb on + strand, within AO356_03945at 880.262 kb on + strand, within AO356_03945at 880.263 kb on - strand, within AO356_03945at 880.263 kb on - strand, within AO356_03945at 880.329 kb on + strand, within AO356_03945at 880.329 kb on + strand, within AO356_03945at 880.329 kb on + strand, within AO356_03945at 880.330 kb on - strand, within AO356_03945at 880.330 kb on - strand, within AO356_03945at 880.330 kb on - strand, within AO356_03945at 880.330 kb on - strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.405 kb on + strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.406 kb on - strand, within AO356_03945at 880.407 kb on + strand, within AO356_03945at 880.407 kb on + strand, within AO356_03945at 880.407 kb on + strand, within AO356_03945at 880.407 kb on + strand, within AO356_03945at 880.407 kb on + strand, within AO356_03945at 880.408 kb on - strand, within AO356_03945at 880.408 kb on - strand, within AO356_03945at 880.408 kb on - strand, within AO356_03945at 880.408 kb on - strand, within AO356_03945at 880.408 kb on - strand, within AO356_03945at 880.408 kb on - strand, within AO356_03945at 880.456 kb on + strand, within AO356_03945at 880.475 kb on - strand, within AO356_03945at 880.475 kb on - strand, within AO356_03945at 880.475 kb on - strand, within AO356_03945at 880.616 kb on - strandat 880.672 kb on + strand, within AO356_03950at 880.672 kb on + strand, within AO356_03950at 880.672 kb on + strand, within AO356_03950at 880.673 kb on - strand, within AO356_03950at 880.686 kb on + strand, within AO356_03950at 880.687 kb on - strand, within AO356_03950at 880.720 kb on + strand, within AO356_03950at 880.721 kb on - strand, within AO356_03950at 880.744 kb on + strand, within AO356_03950at 880.745 kb on - strand, within AO356_03950at 880.745 kb on - strand, within AO356_03950at 880.944 kb on + strand, within AO356_03950at 880.944 kb on + strand, within AO356_03950at 880.944 kb on + strand, within AO356_03950at 880.944 kb on + strand, within AO356_03950at 880.945 kb on - strand, within AO356_03950at 880.945 kb on - strand, within AO356_03950at 880.945 kb on - strand, within AO356_03950at 880.945 kb on - strand, within AO356_03950at 881.124 kb on + strandat 881.125 kb on - strandat 881.125 kb on - strandat 881.193 kb on + strandat 881.193 kb on + strandat 881.193 kb on + strandat 881.194 kb on - strandat 881.194 kb on - strandat 881.194 kb on - strandat 881.243 kb on + strand, within AO356_03955at 881.244 kb on - strand, within AO356_03955at 881.283 kb on + strand, within AO356_03955at 881.284 kb on - strand, within AO356_03955at 881.284 kb on - strand, within AO356_03955at 881.291 kb on + strand, within AO356_03955at 881.292 kb on - strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.293 kb on + strand, within AO356_03955at 881.294 kb on - strand, within AO356_03955at 881.294 kb on - strand, within AO356_03955at 881.294 kb on - strand, within AO356_03955at 881.294 kb on - strand, within AO356_03955at 881.294 kb on - strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.295 kb on + strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.296 kb on - strand, within AO356_03955at 881.324 kb on + strand, within AO356_03955at 881.475 kb on + strand, within AO356_03955at 881.568 kb on + strand, within AO356_03955at 881.568 kb on + strand, within AO356_03955at 881.568 kb on + strand, within AO356_03955at 881.569 kb on - strand, within AO356_03955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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878,811 - +0.3
878,912 + +0.8
878,912 + +0.1
878,912 + -0.2
878,912 + +0.1
878,912 + +0.2
878,913 - -0.7
878,913 - -0.4
878,913 - -0.5
878,913 - -0.4
878,913 - -1.7
878,913 - +1.0
878,951 + +0.6
878,951 + -1.7
878,952 - +0.5
878,952 - +0.2
878,966 - -0.2
879,005 + -0.2
879,005 + +0.0
879,005 + -1.0
879,005 + -0.6
879,005 + +0.3
879,005 + +0.5
879,005 + -0.8
879,006 - -1.0
879,008 + -0.1
879,008 + +0.3
879,008 + +0.2
879,009 - -0.4
879,009 - -0.2
879,009 - +0.1
879,048 + -0.5
879,048 + -1.8
879,048 + +0.4
879,048 + +0.2
879,049 - -0.3
879,049 - +0.3
879,049 - +0.2
879,049 - -1.2
879,049 - +0.5
879,049 - +0.4
879,049 - +0.4
879,049 - +0.8
879,049 - +0.3
879,049 - -1.4
879,112 + -0.9
879,252 + AO356_03940 0.27 +0.3
879,253 - AO356_03940 0.28 -0.6
879,253 - AO356_03940 0.28 +0.5
879,253 - AO356_03940 0.28 +0.3
879,280 + AO356_03940 0.31 +0.3
879,280 + AO356_03940 0.31 +1.8
879,280 + AO356_03940 0.31 +0.5
879,280 + AO356_03940 0.31 +0.2
879,280 + AO356_03940 0.31 +0.1
879,280 + AO356_03940 0.31 -0.8
879,280 + AO356_03940 0.31 -2.8
879,281 - AO356_03940 0.31 +0.4
879,281 - AO356_03940 0.31 -0.4
879,527 + AO356_03940 0.64 -0.5
879,527 + AO356_03940 0.64 -0.4
879,528 - AO356_03940 0.64 +0.1
879,528 - AO356_03940 0.64 -0.2
879,528 - AO356_03940 0.64 +0.7
879,528 - AO356_03940 0.64 +1.1
879,712 + AO356_03940 0.89 +0.6
879,712 + AO356_03940 0.89 +0.7
879,712 + AO356_03940 0.89 +0.1
879,713 - AO356_03940 0.89 +0.3
879,713 - AO356_03940 0.89 +1.2
879,745 + +0.1
879,746 - -1.5
879,746 - -1.2
879,781 + +0.9
879,781 + +0.6
879,781 + +0.6
879,781 + +0.8
879,781 + +1.3
879,782 - -0.3
879,789 + -0.6
879,789 + -0.2
879,789 + -1.8
879,789 + -0.6
879,789 + -0.1
879,822 - -0.6
879,822 - +0.2
879,878 + -0.7
879,878 + +0.7
879,878 + +0.4
879,879 - -0.2
879,879 - +0.2
879,947 + AO356_03945 0.19 +0.1
879,947 + AO356_03945 0.19 +0.1
879,968 + AO356_03945 0.21 +0.1
879,969 - AO356_03945 0.21 +0.6
880,014 + AO356_03945 0.27 +0.5
880,041 + AO356_03945 0.31 -1.0
880,042 - AO356_03945 0.31 -0.1
880,042 - AO356_03945 0.31 -2.1
880,058 + AO356_03945 0.33 +0.3
880,058 + AO356_03945 0.33 +0.5
880,192 + AO356_03945 0.50 +0.0
880,192 + AO356_03945 0.50 -0.2
880,192 + AO356_03945 0.50 -0.2
880,193 - AO356_03945 0.50 +0.5
880,255 - AO356_03945 0.58 +0.6
880,262 + AO356_03945 0.59 +0.7
880,262 + AO356_03945 0.59 +0.8
880,262 + AO356_03945 0.59 +0.3
880,262 + AO356_03945 0.59 +0.2
880,263 - AO356_03945 0.59 -0.1
880,263 - AO356_03945 0.59 +0.5
880,329 + AO356_03945 0.68 +0.4
880,329 + AO356_03945 0.68 -0.9
880,329 + AO356_03945 0.68 +0.4
880,330 - AO356_03945 0.68 +0.7
880,330 - AO356_03945 0.68 +0.3
880,330 - AO356_03945 0.68 -0.1
880,330 - AO356_03945 0.68 -0.8
880,405 + AO356_03945 0.77 +0.6
880,405 + AO356_03945 0.77 -0.5
880,405 + AO356_03945 0.77 -0.1
880,405 + AO356_03945 0.77 -0.8
880,405 + AO356_03945 0.77 -0.2
880,405 + AO356_03945 0.77 -0.2
880,405 + AO356_03945 0.77 +0.5
880,405 + AO356_03945 0.77 -0.1
880,405 + AO356_03945 0.77 +0.1
880,405 + AO356_03945 0.77 -0.5
880,405 + AO356_03945 0.77 +0.6
880,406 - AO356_03945 0.77 +0.5
880,406 - AO356_03945 0.77 -0.2
880,406 - AO356_03945 0.77 -1.0
880,406 - AO356_03945 0.77 -2.7
880,406 - AO356_03945 0.77 -0.7
880,406 - AO356_03945 0.77 +1.1
880,406 - AO356_03945 0.77 -0.8
880,406 - AO356_03945 0.77 +1.6
880,406 - AO356_03945 0.77 +0.4
880,406 - AO356_03945 0.77 -1.0
880,407 + AO356_03945 0.78 +0.7
880,407 + AO356_03945 0.78 -0.4
880,407 + AO356_03945 0.78 -0.7
880,407 + AO356_03945 0.78 -0.9
880,407 + AO356_03945 0.78 -0.7
880,408 - AO356_03945 0.78 -0.4
880,408 - AO356_03945 0.78 -0.6
880,408 - AO356_03945 0.78 +0.8
880,408 - AO356_03945 0.78 -0.4
880,408 - AO356_03945 0.78 +1.8
880,408 - AO356_03945 0.78 +0.5
880,456 + AO356_03945 0.84 -0.5
880,475 - AO356_03945 0.86 -1.2
880,475 - AO356_03945 0.86 +0.0
880,475 - AO356_03945 0.86 +0.4
880,616 - -1.0
880,672 + AO356_03950 0.17 +0.3
880,672 + AO356_03950 0.17 +0.5
880,672 + AO356_03950 0.17 +0.8
880,673 - AO356_03950 0.17 +0.5
880,686 + AO356_03950 0.19 -1.8
880,687 - AO356_03950 0.20 -0.1
880,720 + AO356_03950 0.25 +1.9
880,721 - AO356_03950 0.26 -0.8
880,744 + AO356_03950 0.30 +0.3
880,745 - AO356_03950 0.30 +0.3
880,745 - AO356_03950 0.30 +0.6
880,944 + AO356_03950 0.66 -1.7
880,944 + AO356_03950 0.66 +0.0
880,944 + AO356_03950 0.66 -1.3
880,944 + AO356_03950 0.66 +0.7
880,945 - AO356_03950 0.66 -0.5
880,945 - AO356_03950 0.66 +0.4
880,945 - AO356_03950 0.66 -0.6
880,945 - AO356_03950 0.66 +0.5
881,124 + +0.2
881,125 - +0.0
881,125 - +0.2
881,193 + -0.5
881,193 + +0.1
881,193 + +0.1
881,194 - -0.0
881,194 - +0.3
881,194 - +1.1
881,243 + AO356_03955 0.11 +0.2
881,244 - AO356_03955 0.11 -0.4
881,283 + AO356_03955 0.15 -0.1
881,284 - AO356_03955 0.15 -0.7
881,284 - AO356_03955 0.15 +0.1
881,291 + AO356_03955 0.16 +2.5
881,292 - AO356_03955 0.16 +0.9
881,293 + AO356_03955 0.16 +0.2
881,293 + AO356_03955 0.16 -1.5
881,293 + AO356_03955 0.16 -0.2
881,293 + AO356_03955 0.16 +0.6
881,293 + AO356_03955 0.16 +1.6
881,293 + AO356_03955 0.16 +0.2
881,293 + AO356_03955 0.16 -1.0
881,293 + AO356_03955 0.16 +1.3
881,293 + AO356_03955 0.16 +0.1
881,294 - AO356_03955 0.17 -0.2
881,294 - AO356_03955 0.17 +0.2
881,294 - AO356_03955 0.17 +0.9
881,294 - AO356_03955 0.17 -0.2
881,294 - AO356_03955 0.17 -1.1
881,295 + AO356_03955 0.17 +0.6
881,295 + AO356_03955 0.17 +0.6
881,295 + AO356_03955 0.17 -0.9
881,295 + AO356_03955 0.17 +0.9
881,295 + AO356_03955 0.17 +0.4
881,295 + AO356_03955 0.17 +0.1
881,295 + AO356_03955 0.17 -0.5
881,295 + AO356_03955 0.17 +0.3
881,295 + AO356_03955 0.17 +0.4
881,295 + AO356_03955 0.17 +1.1
881,295 + AO356_03955 0.17 +0.0
881,295 + AO356_03955 0.17 +0.3
881,295 + AO356_03955 0.17 +0.1
881,295 + AO356_03955 0.17 -0.1
881,295 + AO356_03955 0.17 -0.2
881,295 + AO356_03955 0.17 +0.3
881,295 + AO356_03955 0.17 +0.1
881,295 + AO356_03955 0.17 +0.5
881,295 + AO356_03955 0.17 -0.2
881,295 + AO356_03955 0.17 +0.3
881,295 + AO356_03955 0.17 +0.8
881,295 + AO356_03955 0.17 -0.0
881,295 + AO356_03955 0.17 -0.4
881,295 + AO356_03955 0.17 -0.9
881,295 + AO356_03955 0.17 -0.5
881,296 - AO356_03955 0.17 +0.7
881,296 - AO356_03955 0.17 -1.4
881,296 - AO356_03955 0.17 +0.2
881,296 - AO356_03955 0.17 +0.4
881,296 - AO356_03955 0.17 -0.9
881,296 - AO356_03955 0.17 -2.0
881,296 - AO356_03955 0.17 -0.0
881,296 - AO356_03955 0.17 -0.9
881,296 - AO356_03955 0.17 +0.9
881,296 - AO356_03955 0.17 +0.4
881,296 - AO356_03955 0.17 -1.5
881,296 - AO356_03955 0.17 -0.3
881,296 - AO356_03955 0.17 +0.4
881,296 - AO356_03955 0.17 -0.4
881,296 - AO356_03955 0.17 +0.0
881,296 - AO356_03955 0.17 -0.7
881,296 - AO356_03955 0.17 +0.5
881,296 - AO356_03955 0.17 +0.6
881,296 - AO356_03955 0.17 -0.8
881,296 - AO356_03955 0.17 +1.6
881,296 - AO356_03955 0.17 -0.8
881,296 - AO356_03955 0.17 -0.8
881,296 - AO356_03955 0.17 +0.2
881,296 - AO356_03955 0.17 -0.3
881,296 - AO356_03955 0.17 +1.1
881,296 - AO356_03955 0.17 -1.1
881,296 - AO356_03955 0.17 -0.5
881,296 - AO356_03955 0.17 +0.4
881,296 - AO356_03955 0.17 +1.1
881,296 - AO356_03955 0.17 -0.5
881,296 - AO356_03955 0.17 +0.1
881,296 - AO356_03955 0.17 -0.2
881,324 + AO356_03955 0.20 +0.7
881,475 + AO356_03955 0.35 -0.0
881,568 + AO356_03955 0.44 -0.4
881,568 + AO356_03955 0.44 -0.3
881,568 + AO356_03955 0.44 +0.8
881,569 - AO356_03955 0.45 +0.1

Or see this region's nucleotide sequence