Strain Fitness in Sinorhizobium meliloti 1021 around SMc04398

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04397 and SMc04398 overlap by 7 nucleotidesSMc04398 and SMc04399 overlap by 8 nucleotides SMc04397: SMc04397 - L-sorbosone dehydrogenase, NADP dependent protein, at 3,601,190 to 3,602,704 SMc04397 SMc04398: SMc04398 - enoyl-CoA hydratase, at 3,602,698 to 3,603,477 SMc04398 SMc04399: SMc04399 - acyl-COA transferase, at 3,603,470 to 3,605,092 SMc04399 Position (kb) 3602 3603 3604Strain fitness (log2 ratio) -2 -1 0 1at 3601.828 kb on - strand, within SMc04397at 3602.222 kb on + strand, within SMc04397at 3602.223 kb on - strand, within SMc04397at 3602.261 kb on - strand, within SMc04397at 3602.275 kb on + strand, within SMc04397at 3602.276 kb on - strand, within SMc04397at 3602.276 kb on - strand, within SMc04397at 3602.276 kb on - strand, within SMc04397at 3602.281 kb on - strand, within SMc04397at 3602.320 kb on - strand, within SMc04397at 3602.553 kb on + strandat 3603.246 kb on - strand, within SMc04398at 3603.610 kb on + strandat 3603.696 kb on + strand, within SMc04399at 3603.696 kb on + strand, within SMc04399at 3603.696 kb on + strand, within SMc04399at 3603.696 kb on + strand, within SMc04399at 3603.696 kb on + strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3603.697 kb on - strand, within SMc04399at 3604.305 kb on + strand, within SMc04399at 3604.306 kb on - strand, within SMc04399at 3604.351 kb on - strand, within SMc04399

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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3,601,828 - SMc04397 0.42 -0.1
3,602,222 + SMc04397 0.68 +0.2
3,602,223 - SMc04397 0.68 +0.5
3,602,261 - SMc04397 0.71 -0.1
3,602,275 + SMc04397 0.72 -0.0
3,602,276 - SMc04397 0.72 -0.3
3,602,276 - SMc04397 0.72 -0.4
3,602,276 - SMc04397 0.72 -0.5
3,602,281 - SMc04397 0.72 +0.6
3,602,320 - SMc04397 0.75 +0.0
3,602,553 + +0.5
3,603,246 - SMc04398 0.70 -2.4
3,603,610 + -0.5
3,603,696 + SMc04399 0.14 -0.3
3,603,696 + SMc04399 0.14 -0.1
3,603,696 + SMc04399 0.14 +0.5
3,603,696 + SMc04399 0.14 +0.2
3,603,696 + SMc04399 0.14 -0.4
3,603,697 - SMc04399 0.14 +0.3
3,603,697 - SMc04399 0.14 -0.1
3,603,697 - SMc04399 0.14 +0.3
3,603,697 - SMc04399 0.14 +0.4
3,603,697 - SMc04399 0.14 +0.1
3,603,697 - SMc04399 0.14 +0.1
3,603,697 - SMc04399 0.14 -0.4
3,604,305 + SMc04399 0.51 +0.6
3,604,306 - SMc04399 0.52 +0.2
3,604,351 - SMc04399 0.54 -0.6

Or see this region's nucleotide sequence