Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04383 and SMc04384 are separated by 10 nucleotides SMc04384 and SMc04385 are separated by 34 nucleotides
SMc04383: SMc04383 - putative hydrolase, required for lysine catabolism (from data) , at 3,583,247 to 3,584,647
SMc04383
SMc04384: SMc04384 - (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) , at 3,584,658 to 3,586,079
SMc04384
SMc04385: SMc04385 - L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) , at 3,586,114 to 3,587,646
SMc04385
Position (kb)
3584
3585
3586
3587 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3583.717 kb on + strand, within SMc04383 at 3583.853 kb on + strand, within SMc04383 at 3583.915 kb on + strand, within SMc04383 at 3584.164 kb on - strand, within SMc04383 at 3584.250 kb on - strand, within SMc04383 at 3584.433 kb on - strand, within SMc04383 at 3584.464 kb on + strand, within SMc04383 at 3584.576 kb on + strand at 3584.576 kb on + strand at 3584.623 kb on + strand at 3584.648 kb on + strand at 3584.873 kb on + strand, within SMc04384 at 3585.123 kb on + strand, within SMc04384 at 3585.501 kb on + strand, within SMc04384 at 3585.592 kb on + strand, within SMc04384 at 3585.593 kb on - strand, within SMc04384 at 3585.610 kb on + strand, within SMc04384 at 3585.610 kb on + strand, within SMc04384 at 3585.610 kb on + strand, within SMc04384 at 3585.683 kb on - strand, within SMc04384 at 3585.755 kb on + strand, within SMc04384 at 3585.755 kb on + strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.984 kb on + strand at 3585.993 kb on + strand at 3585.993 kb on + strand at 3585.994 kb on - strand at 3585.994 kb on - strand at 3586.094 kb on + strand at 3586.094 kb on + strand at 3586.262 kb on + strand at 3586.329 kb on - strand, within SMc04385 at 3587.077 kb on + strand, within SMc04385
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 3,583,717 + SMc04383 0.34 -2.5 3,583,853 + SMc04383 0.43 -1.8 3,583,915 + SMc04383 0.48 -4.2 3,584,164 - SMc04383 0.65 +1.0 3,584,250 - SMc04383 0.72 -2.0 3,584,433 - SMc04383 0.85 -4.4 3,584,464 + SMc04383 0.87 -1.0 3,584,576 + -3.9 3,584,576 + -1.3 3,584,623 + -3.7 3,584,648 + -2.0 3,584,873 + SMc04384 0.15 -2.9 3,585,123 + SMc04384 0.33 -4.9 3,585,501 + SMc04384 0.59 -5.8 3,585,592 + SMc04384 0.66 -4.5 3,585,593 - SMc04384 0.66 -1.7 3,585,610 + SMc04384 0.67 -4.1 3,585,610 + SMc04384 0.67 -3.5 3,585,610 + SMc04384 0.67 -4.8 3,585,683 - SMc04384 0.72 -1.7 3,585,755 + SMc04384 0.77 -2.3 3,585,755 + SMc04384 0.77 -4.7 3,585,756 - SMc04384 0.77 -2.2 3,585,756 - SMc04384 0.77 -0.8 3,585,756 - SMc04384 0.77 -3.9 3,585,756 - SMc04384 0.77 -3.8 3,585,984 + -2.8 3,585,993 + -4.4 3,585,993 + -3.4 3,585,994 - -4.1 3,585,994 - -2.8 3,586,094 + +0.7 3,586,094 + -0.9 3,586,262 + -1.3 3,586,329 - SMc04385 0.14 -4.2 3,587,077 + SMc04385 0.63 -2.9
Or see this region's nucleotide sequence