Strain Fitness in Sinorhizobium meliloti 1021 around SMc03983

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03982 and SMc03983 are separated by 633 nucleotidesSMc03983 and SMc03984 are separated by 174 nucleotides SMc03982: SMc03982 - transposase ISRM3, at 2,978,509 to 2,979,705 SMc03982 SMc03983: SMc03983 - fructose-bisphosphate aldolase class I protein, at 2,980,339 to 2,981,364 SMc03983 SMc03984: SMc03984 - hypothetical protein, at 2,981,539 to 2,982,456 SMc03984 Position (kb) 2980 2981 2982Strain fitness (log2 ratio) -1 0 1at 2979.856 kb on + strandat 2979.992 kb on + strandat 2980.037 kb on + strandat 2980.037 kb on + strandat 2980.068 kb on + strandat 2980.068 kb on + strandat 2980.069 kb on - strandat 2980.069 kb on - strandat 2980.069 kb on - strandat 2980.103 kb on - strandat 2980.338 kb on + strandat 2980.481 kb on - strand, within SMc03983at 2980.522 kb on + strand, within SMc03983at 2980.522 kb on + strand, within SMc03983at 2980.524 kb on + strand, within SMc03983at 2980.525 kb on - strand, within SMc03983at 2980.525 kb on - strand, within SMc03983at 2980.543 kb on + strand, within SMc03983at 2980.544 kb on - strand, within SMc03983at 2980.718 kb on - strand, within SMc03983at 2981.203 kb on - strand, within SMc03983at 2981.363 kb on - strandat 2981.375 kb on - strandat 2981.375 kb on - strandat 2981.503 kb on + strandat 2982.031 kb on + strand, within SMc03984at 2982.167 kb on - strand, within SMc03984at 2982.167 kb on - strand, within SMc03984at 2982.167 kb on - strand, within SMc03984at 2982.198 kb on - strand, within SMc03984at 2982.198 kb on - strand, within SMc03984

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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2,979,856 + -0.8
2,979,992 + +1.0
2,980,037 + +0.4
2,980,037 + -0.2
2,980,068 + -0.4
2,980,068 + +0.1
2,980,069 - +0.5
2,980,069 - +0.4
2,980,069 - +0.1
2,980,103 - -0.6
2,980,338 + -1.0
2,980,481 - SMc03983 0.14 -0.8
2,980,522 + SMc03983 0.18 -0.5
2,980,522 + SMc03983 0.18 +1.1
2,980,524 + SMc03983 0.18 -0.7
2,980,525 - SMc03983 0.18 +0.3
2,980,525 - SMc03983 0.18 +0.0
2,980,543 + SMc03983 0.20 +0.5
2,980,544 - SMc03983 0.20 +0.0
2,980,718 - SMc03983 0.37 +0.0
2,981,203 - SMc03983 0.84 +0.6
2,981,363 - +0.0
2,981,375 - -0.0
2,981,375 - +0.1
2,981,503 + -0.7
2,982,031 + SMc03984 0.54 -1.1
2,982,167 - SMc03984 0.68 -0.0
2,982,167 - SMc03984 0.68 +0.0
2,982,167 - SMc03984 0.68 +0.0
2,982,198 - SMc03984 0.72 -0.0
2,982,198 - SMc03984 0.72 -0.2

Or see this region's nucleotide sequence