Strain Fitness in Sinorhizobium meliloti 1021 around SMc02404

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02403 and SMc02404 are separated by 296 nucleotidesSMc02404 and SMc02405 overlap by 1 nucleotides SMc02403: SMc02403 - murein transglycosylase, at 1,153,838 to 1,155,883 SMc02403 SMc02404: SMc02404 - dihydrodipicolinate synthase, at 1,156,180 to 1,157,064 SMc02404 SMc02405: SMc02405 - SsrA-binding protein, at 1,157,064 to 1,157,543 SMc02405 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -1 0 1at 1155.227 kb on + strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.227 kb on + strand, within SMc02403at 1155.614 kb on + strand, within SMc02403at 1155.615 kb on - strand, within SMc02403at 1155.615 kb on - strand, within SMc02403at 1155.619 kb on + strand, within SMc02403at 1155.727 kb on + strandat 1155.728 kb on - strandat 1155.728 kb on - strandat 1155.788 kb on + strandat 1155.927 kb on + strandat 1155.928 kb on - strandat 1155.928 kb on - strandat 1155.928 kb on - strandat 1156.148 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.565 kb on - strandat 1157.566 kb on + strandat 1157.566 kb on + strandat 1157.566 kb on + strandat 1157.567 kb on - strandat 1157.567 kb on - strandat 1157.567 kb on - strandat 1157.841 kb on + strandat 1157.841 kb on + strandat 1157.993 kb on + strandat 1157.993 kb on + strandat 1157.993 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,155,227 + SMc02403 0.68 +0.0
1,155,227 + SMc02403 0.68 +0.0
1,155,227 + SMc02403 0.68 +0.8
1,155,227 + SMc02403 0.68 -0.5
1,155,614 + SMc02403 0.87 -0.2
1,155,615 - SMc02403 0.87 -0.2
1,155,615 - SMc02403 0.87 +0.2
1,155,619 + SMc02403 0.87 -0.0
1,155,727 + -1.6
1,155,728 - -0.6
1,155,728 - +0.3
1,155,788 + +0.4
1,155,927 + +0.2
1,155,928 - -0.7
1,155,928 - -0.3
1,155,928 - -0.5
1,156,148 + +0.5
1,157,564 + +0.2
1,157,564 + -0.6
1,157,564 + +1.1
1,157,564 + -0.2
1,157,564 + -0.2
1,157,565 - -0.5
1,157,566 + -0.4
1,157,566 + -0.3
1,157,566 + -0.2
1,157,567 - +0.0
1,157,567 - +0.4
1,157,567 - +0.2
1,157,841 + -0.4
1,157,841 + +0.5
1,157,993 + +1.2
1,157,993 + +0.6
1,157,993 + -0.5

Or see this region's nucleotide sequence