Strain Fitness in Sinorhizobium meliloti 1021 around SMc01613

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01612 and SMc01613 are separated by 636 nucleotidesSMc01613 and SMc01614 are separated by 37 nucleotidesSMc01614 and SMc01615 overlap by 4 nucleotides SMc01612: SMc01612 - transposase ISRM3, at 2,402,527 to 2,403,723 SMc01612 SMc01613: SMc01613 - ribose-5-phosphate isomerase B, at 2,404,360 to 2,404,797 SMc01613 SMc01614: SMc01614 - triosephosphate isomerase, at 2,404,835 to 2,405,602 SMc01614 SMc01615: SMc01615 - transcriptional regulator, at 2,405,599 to 2,406,384 SMc01615 Position (kb) 2404 2405Strain fitness (log2 ratio) -1 0 1at 2404.172 kb on + strandat 2404.172 kb on + strandat 2404.194 kb on + strandat 2404.224 kb on + strandat 2404.224 kb on + strandat 2404.224 kb on + strandat 2404.224 kb on + strandat 2404.224 kb on + strandat 2404.224 kb on + strandat 2404.224 kb on + strandat 2404.225 kb on - strandat 2404.225 kb on - strandat 2404.225 kb on - strandat 2404.225 kb on - strandat 2404.225 kb on - strandat 2404.362 kb on - strandat 2404.362 kb on - strandat 2404.443 kb on + strand, within SMc01613at 2404.444 kb on - strand, within SMc01613at 2404.538 kb on + strand, within SMc01613at 2404.539 kb on - strand, within SMc01613at 2404.623 kb on + strand, within SMc01613at 2404.682 kb on + strand, within SMc01613at 2404.682 kb on + strand, within SMc01613at 2404.683 kb on - strand, within SMc01613at 2404.813 kb on + strandat 2404.971 kb on + strand, within SMc01614at 2405.044 kb on - strand, within SMc01614at 2405.044 kb on - strand, within SMc01614at 2405.060 kb on + strand, within SMc01614at 2405.094 kb on + strand, within SMc01614at 2405.174 kb on - strand, within SMc01614at 2405.615 kb on - strandat 2405.778 kb on - strand, within SMc01615at 2405.778 kb on - strand, within SMc01615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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2,404,172 + -0.4
2,404,172 + -0.0
2,404,194 + +0.1
2,404,224 + -0.0
2,404,224 + +0.1
2,404,224 + -0.7
2,404,224 + -0.0
2,404,224 + -0.5
2,404,224 + +0.9
2,404,224 + -0.2
2,404,225 - +0.1
2,404,225 - -0.1
2,404,225 - +0.4
2,404,225 - -0.0
2,404,225 - -0.4
2,404,362 - +0.5
2,404,362 - +0.1
2,404,443 + SMc01613 0.19 +1.0
2,404,444 - SMc01613 0.19 +0.3
2,404,538 + SMc01613 0.41 +0.5
2,404,539 - SMc01613 0.41 -0.2
2,404,623 + SMc01613 0.60 +0.1
2,404,682 + SMc01613 0.74 +0.5
2,404,682 + SMc01613 0.74 -0.0
2,404,683 - SMc01613 0.74 +0.0
2,404,813 + -0.9
2,404,971 + SMc01614 0.18 -0.1
2,405,044 - SMc01614 0.27 -0.3
2,405,044 - SMc01614 0.27 -0.2
2,405,060 + SMc01614 0.29 +0.2
2,405,094 + SMc01614 0.34 -0.4
2,405,174 - SMc01614 0.44 -0.3
2,405,615 - +0.1
2,405,778 - SMc01615 0.23 +0.8
2,405,778 - SMc01615 0.23 -0.1

Or see this region's nucleotide sequence