Strain Fitness in Sinorhizobium meliloti 1021 around SMc01276

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01278 and SMc01277 are separated by 161 nucleotidesSMc01277 and SMc01276 overlap by 8 nucleotidesSMc01276 and SMc01275 overlap by 1 nucleotides SMc01278: SMc01278 - chaperone-like protein, at 1,498,625 to 1,498,939 SMc01278 SMc01277: SMc01277 - hypothetical protein, at 1,499,101 to 1,499,886 SMc01277 SMc01276: SMc01276 - phosphoglycolate phosphatase, at 1,499,879 to 1,500,544 SMc01276 SMc01275: SMc01275 - ribosomal large subunit pseudouridine synthase C protein, at 1,500,544 to 1,501,536 SMc01275 Position (kb) 1499 1500 1501Strain fitness (log2 ratio) -2 -1 0 1at 1499.910 kb on - strandat 1499.974 kb on - strand, within SMc01276at 1500.031 kb on - strand, within SMc01276at 1500.031 kb on - strand, within SMc01276at 1500.321 kb on - strand, within SMc01276at 1500.323 kb on - strand, within SMc01276at 1500.323 kb on - strand, within SMc01276at 1500.323 kb on - strand, within SMc01276at 1500.323 kb on - strand, within SMc01276at 1500.480 kb on - strandat 1500.480 kb on - strandat 1500.661 kb on + strand, within SMc01275at 1500.662 kb on - strand, within SMc01275at 1500.662 kb on - strand, within SMc01275at 1500.766 kb on - strand, within SMc01275at 1500.807 kb on - strand, within SMc01275at 1500.861 kb on - strand, within SMc01275at 1500.864 kb on - strand, within SMc01275at 1500.941 kb on - strand, within SMc01275at 1501.002 kb on - strand, within SMc01275at 1501.002 kb on - strand, within SMc01275at 1501.079 kb on - strand, within SMc01275at 1501.162 kb on + strand, within SMc01275at 1501.163 kb on - strand, within SMc01275at 1501.163 kb on - strand, within SMc01275at 1501.163 kb on - strand, within SMc01275at 1501.163 kb on - strand, within SMc01275at 1501.165 kb on - strand, within SMc01275at 1501.370 kb on - strand, within SMc01275at 1501.370 kb on - strand, within SMc01275at 1501.370 kb on - strand, within SMc01275at 1501.370 kb on - strand, within SMc01275at 1501.526 kb on - strandat 1501.526 kb on - strandat 1501.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,499,910 - +0.1
1,499,974 - SMc01276 0.14 +0.2
1,500,031 - SMc01276 0.23 -0.4
1,500,031 - SMc01276 0.23 +0.4
1,500,321 - SMc01276 0.66 +0.1
1,500,323 - SMc01276 0.67 +0.2
1,500,323 - SMc01276 0.67 -0.2
1,500,323 - SMc01276 0.67 +0.8
1,500,323 - SMc01276 0.67 -0.2
1,500,480 - -0.0
1,500,480 - +0.2
1,500,661 + SMc01275 0.12 -0.6
1,500,662 - SMc01275 0.12 +0.4
1,500,662 - SMc01275 0.12 +0.3
1,500,766 - SMc01275 0.22 +0.6
1,500,807 - SMc01275 0.26 -0.0
1,500,861 - SMc01275 0.32 +0.4
1,500,864 - SMc01275 0.32 -0.6
1,500,941 - SMc01275 0.40 +0.3
1,501,002 - SMc01275 0.46 +0.2
1,501,002 - SMc01275 0.46 +0.5
1,501,079 - SMc01275 0.54 +0.7
1,501,162 + SMc01275 0.62 +1.4
1,501,163 - SMc01275 0.62 -0.2
1,501,163 - SMc01275 0.62 -1.8
1,501,163 - SMc01275 0.62 +1.3
1,501,163 - SMc01275 0.62 +0.3
1,501,165 - SMc01275 0.63 +0.9
1,501,370 - SMc01275 0.83 +0.5
1,501,370 - SMc01275 0.83 +0.1
1,501,370 - SMc01275 0.83 +0.5
1,501,370 - SMc01275 0.83 -0.2
1,501,526 - +0.1
1,501,526 - +0.1
1,501,526 - -0.1

Or see this region's nucleotide sequence