Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01124 and SMc01123 overlap by 4 nucleotides SMc01123 and SMc01122 overlap by 4 nucleotides SMc01122 and SMc01121 are separated by 91 nucleotides
SMc01124: SMc01124 - PII uridylyl-transferase, at 429,607 to 432,456
SMc01124
SMc01123: SMc01123 - virulence factor MviN-like protein, at 432,453 to 434,060
SMc01123
SMc01122: SMc01122 - hypothetical protein, at 434,057 to 434,446
SMc01122
SMc01121: SMc01121 - tryptophanyl-tRNA synthetase, at 434,538 to 435,602
SMc01121
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 431.536 kb on + strand, within SMc01124 at 431.539 kb on + strand, within SMc01124 at 431.539 kb on + strand, within SMc01124 at 431.662 kb on + strand, within SMc01124 at 431.662 kb on + strand, within SMc01124 at 431.686 kb on + strand, within SMc01124 at 431.686 kb on + strand, within SMc01124 at 431.991 kb on + strand, within SMc01124 at 432.117 kb on + strand, within SMc01124 at 432.268 kb on + strand at 432.268 kb on + strand at 432.268 kb on + strand at 434.381 kb on + strand, within SMc01122 at 434.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 431,536 + SMc01124 0.68 -1.5 431,539 + SMc01124 0.68 -2.8 431,539 + SMc01124 0.68 -2.5 431,662 + SMc01124 0.72 -1.3 431,662 + SMc01124 0.72 -2.0 431,686 + SMc01124 0.73 -1.8 431,686 + SMc01124 0.73 -1.1 431,991 + SMc01124 0.84 -0.3 432,117 + SMc01124 0.88 -0.4 432,268 + -0.4 432,268 + -1.1 432,268 + -0.6 434,381 + SMc01122 0.83 -0.3 434,481 + -1.3
Or see this region's nucleotide sequence