Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01111 and SMc01110 are separated by 138 nucleotides SMc01110 and SMc01109 are separated by 336 nucleotides SMc01109 and SMc01108 are separated by 165 nucleotides
SMc01111: SMc01111 - apolipoprotein N-acyltransferase, at 443,701 to 445,296
SMc01111
SMc01110: SMc01110 - DNA-binding protein, at 445,435 to 445,854
SMc01110
SMc01109: SMc01109 - S-adenosylmethionine synthetase, at 446,191 to 447,471
SMc01109
SMc01108: SMc01108 - tRNA (guanine-N(7)-)-methyltransferase, at 447,637 to 448,392
SMc01108
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 445.282 kb on - strand at 445.284 kb on + strand at 445.435 kb on - strand at 445.628 kb on + strand, within SMc01110 at 445.628 kb on + strand, within SMc01110 at 445.629 kb on - strand, within SMc01110 at 445.629 kb on - strand, within SMc01110 at 445.720 kb on + strand, within SMc01110 at 445.720 kb on + strand, within SMc01110 at 445.720 kb on + strand, within SMc01110 at 445.721 kb on - strand, within SMc01110 at 445.721 kb on - strand, within SMc01110 at 445.812 kb on - strand, within SMc01110 at 445.812 kb on - strand, within SMc01110 at 445.852 kb on + strand at 445.853 kb on - strand at 445.906 kb on + strand at 445.907 kb on - strand at 445.907 kb on - strand at 446.098 kb on + strand at 446.100 kb on + strand at 446.106 kb on + strand at 446.109 kb on - strand at 447.517 kb on - strand at 447.680 kb on + strand at 447.966 kb on + strand, within SMc01108 at 447.967 kb on - strand, within SMc01108 at 447.967 kb on - strand, within SMc01108 at 447.967 kb on - strand, within SMc01108 at 448.028 kb on - strand, within SMc01108 at 448.097 kb on - strand, within SMc01108 at 448.223 kb on - strand, within SMc01108 at 448.330 kb on + strand at 448.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 445,282 - -0.4 445,284 + -0.7 445,435 - -0.5 445,628 + SMc01110 0.46 -0.3 445,628 + SMc01110 0.46 +0.0 445,629 - SMc01110 0.46 -1.1 445,629 - SMc01110 0.46 -0.6 445,720 + SMc01110 0.68 -0.3 445,720 + SMc01110 0.68 +0.3 445,720 + SMc01110 0.68 -0.5 445,721 - SMc01110 0.68 -0.3 445,721 - SMc01110 0.68 -2.8 445,812 - SMc01110 0.90 +0.3 445,812 - SMc01110 0.90 -0.3 445,852 + -0.0 445,853 - -0.1 445,906 + -1.0 445,907 - -0.1 445,907 - -0.1 446,098 + -0.6 446,100 + +0.1 446,106 + -1.4 446,109 - +0.0 447,517 - +0.4 447,680 + -0.3 447,966 + SMc01108 0.44 +0.1 447,967 - SMc01108 0.44 +0.0 447,967 - SMc01108 0.44 -0.8 447,967 - SMc01108 0.44 -0.4 448,028 - SMc01108 0.52 -0.2 448,097 - SMc01108 0.61 +0.4 448,223 - SMc01108 0.78 -1.0 448,330 + +0.1 448,370 - -0.0
Or see this region's nucleotide sequence