Strain Fitness in Sinorhizobium meliloti 1021 around SMc00926

Experiment: L-Lysine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00833 and SMc00926 are separated by 94 nucleotidesSMc00926 and SMc00925 are separated by 238 nucleotides SMc00833: SMc00833 - D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data), at 854,880 to 856,097 SMc00833 SMc00926: SMc00926 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data), at 856,192 to 857,523 SMc00926 SMc00925: SMc00925 - signal peptide protein, at 857,762 to 858,457 SMc00925 Position (kb) 856 857 858Strain fitness (log2 ratio) -2 -1 0 1at 855.240 kb on + strand, within SMc00833at 855.241 kb on - strand, within SMc00833at 855.307 kb on + strand, within SMc00833at 855.307 kb on + strand, within SMc00833at 855.731 kb on - strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.912 kb on + strand, within SMc00833at 855.913 kb on - strand, within SMc00833at 855.913 kb on - strand, within SMc00833at 855.915 kb on - strand, within SMc00833at 856.058 kb on - strandat 856.058 kb on - strandat 856.058 kb on - strandat 856.096 kb on - strandat 856.127 kb on + strandat 856.128 kb on - strandat 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.343 kb on - strand, within SMc00926at 856.387 kb on + strand, within SMc00926at 856.387 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.549 kb on + strand, within SMc00926at 856.549 kb on + strandat 856.550 kb on - strand, within SMc00926at 856.551 kb on + strand, within SMc00926at 856.551 kb on + strand, within SMc00926at 856.552 kb on - strand, within SMc00926at 856.552 kb on - strand, within SMc00926at 856.762 kb on + strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.059 kb on + strand, within SMc00926at 857.060 kb on - strand, within SMc00926at 857.067 kb on + strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.090 kb on - strand, within SMc00926at 857.194 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.380 kb on - strand, within SMc00926at 857.419 kb on - strandat 857.456 kb on + strandat 857.457 kb on - strandat 857.494 kb on + strandat 857.495 kb on - strandat 857.495 kb on - strandat 857.607 kb on + strandat 857.608 kb on - strandat 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.878 kb on - strand, within SMc00925at 857.878 kb on - strand, within SMc00925at 857.994 kb on + strand, within SMc00925at 857.994 kb on + strand, within SMc00925at 857.995 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.217 kb on - strand, within SMc00925at 858.222 kb on + strand, within SMc00925at 858.222 kb on + strand, within SMc00925at 858.223 kb on - strand, within SMc00925at 858.223 kb on - strand, within SMc00925at 858.295 kb on - strand, within SMc00925at 858.401 kb on - strandat 858.401 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
remove
855,240 + SMc00833 0.30 +0.0
855,241 - SMc00833 0.30 -0.5
855,307 + SMc00833 0.35 +0.1
855,307 + SMc00833 0.35 -0.3
855,731 - SMc00833 0.70 -0.4
855,843 + SMc00833 0.79 -1.7
855,843 + SMc00833 0.79 +0.5
855,843 + SMc00833 0.79 -0.1
855,843 + SMc00833 0.79 -0.2
855,912 + SMc00833 0.85 +0.1
855,913 - SMc00833 0.85 -0.7
855,913 - SMc00833 0.85 +0.3
855,915 - SMc00833 0.85 -0.1
856,058 - +0.0
856,058 - -0.1
856,058 - -0.2
856,096 - -1.4
856,127 + -1.3
856,128 - -0.1
856,342 + SMc00926 0.11 +0.6
856,342 + SMc00926 0.11 -0.8
856,342 + SMc00926 0.11 +0.6
856,342 + SMc00926 0.11 +0.3
856,342 + SMc00926 0.11 -0.3
856,342 + SMc00926 0.11 -0.3
856,342 + SMc00926 0.11 -0.6
856,342 + SMc00926 0.11 -0.2
856,342 + SMc00926 0.11 -0.7
856,343 - SMc00926 0.11 -1.0
856,387 + SMc00926 0.15 +0.3
856,387 + SMc00926 0.15 -0.2
856,504 + SMc00926 0.23 -0.1
856,504 + SMc00926 0.23 -2.4
856,504 + SMc00926 0.23 -0.5
856,505 - SMc00926 0.23 -0.2
856,505 - SMc00926 0.23 -0.3
856,505 - SMc00926 0.23 +0.0
856,505 - SMc00926 0.23 +0.4
856,549 + SMc00926 0.27 -0.7
856,549 + -0.9
856,550 - SMc00926 0.27 -1.1
856,551 + SMc00926 0.27 -0.5
856,551 + SMc00926 0.27 -0.5
856,552 - SMc00926 0.27 -0.1
856,552 - SMc00926 0.27 -0.4
856,762 + SMc00926 0.43 -0.6
857,026 - SMc00926 0.63 +0.1
857,026 - SMc00926 0.63 -0.1
857,059 + SMc00926 0.65 +0.0
857,060 - SMc00926 0.65 -0.0
857,067 + SMc00926 0.66 -1.7
857,068 - SMc00926 0.66 -0.5
857,068 - SMc00926 0.66 -1.3
857,068 - SMc00926 0.66 -0.2
857,068 - SMc00926 0.66 +0.2
857,089 + SMc00926 0.67 +0.3
857,089 + SMc00926 0.67 -0.9
857,089 + SMc00926 0.67 -0.3
857,090 - SMc00926 0.67 -0.2
857,194 + SMc00926 0.75 -0.5
857,323 + SMc00926 0.85 -0.4
857,323 + SMc00926 0.85 -0.6
857,323 + SMc00926 0.85 -0.4
857,323 + SMc00926 0.85 -0.2
857,324 - SMc00926 0.85 -0.6
857,324 - SMc00926 0.85 -0.0
857,324 - SMc00926 0.85 -0.1
857,324 - SMc00926 0.85 -0.4
857,380 - SMc00926 0.89 -0.9
857,419 - -1.7
857,456 + -0.3
857,457 - -0.4
857,494 + -0.0
857,495 - +1.3
857,495 - -0.0
857,607 + +0.9
857,608 - +0.4
857,877 + SMc00925 0.17 -0.5
857,877 + SMc00925 0.17 +0.1
857,877 + SMc00925 0.17 -0.3
857,877 + SMc00925 0.17 -0.1
857,878 - SMc00925 0.17 +0.8
857,878 - SMc00925 0.17 +0.0
857,994 + SMc00925 0.33 +0.1
857,994 + SMc00925 0.33 -0.4
857,995 - SMc00925 0.33 +0.1
858,001 - SMc00925 0.34 -0.3
858,001 - SMc00925 0.34 +0.2
858,001 - SMc00925 0.34 +0.3
858,217 - SMc00925 0.65 +0.1
858,222 + SMc00925 0.66 -0.3
858,222 + SMc00925 0.66 -0.0
858,223 - SMc00925 0.66 +0.3
858,223 - SMc00925 0.66 +0.3
858,295 - SMc00925 0.77 +0.4
858,401 - -0.1
858,401 - -0.3

Or see this region's nucleotide sequence