Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00781 and SMc00782 are separated by 259 nucleotides SMc00782 and SMc00783 overlap by 11 nucleotides
SMc00781: SMc00781 - malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) <small>(from data)</small>, at 801,316 to 802,812
SMc00781
SMc00782: SMc00782 - hypothetical protein, at 803,072 to 804,184
SMc00782
SMc00783: SMc00783 - hypothetical protein, at 804,174 to 805,226
SMc00783
Position (kb) 803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 802.135 kb on + strand, within SMc00781 at 802.255 kb on + strand, within SMc00781 at 802.256 kb on - strand, within SMc00781 at 802.257 kb on + strand, within SMc00781 at 802.453 kb on + strand, within SMc00781 at 802.453 kb on + strand, within SMc00781 at 802.454 kb on - strand, within SMc00781 at 802.454 kb on - strand, within SMc00781 at 802.454 kb on - strand, within SMc00781 at 802.454 kb on - strand at 802.504 kb on + strand, within SMc00781 at 802.504 kb on + strand, within SMc00781 at 802.541 kb on - strand, within SMc00781 at 802.561 kb on + strand, within SMc00781 at 802.562 kb on - strand, within SMc00781 at 802.562 kb on - strand, within SMc00781 at 802.655 kb on - strand, within SMc00781 at 802.942 kb on + strand at 802.943 kb on - strand at 802.943 kb on - strand at 802.971 kb on + strand at 802.972 kb on - strand at 802.972 kb on - strand at 802.972 kb on - strand at 802.972 kb on - strand at 802.972 kb on - strand at 802.972 kb on - strand at 802.972 kb on - strand at 802.981 kb on - strand at 802.981 kb on - strand at 802.981 kb on - strand at 803.056 kb on - strand at 803.174 kb on + strand at 803.185 kb on - strand, within SMc00782 at 803.197 kb on + strand, within SMc00782 at 803.214 kb on + strand, within SMc00782 at 803.215 kb on - strand, within SMc00782 at 803.228 kb on + strand, within SMc00782 at 803.228 kb on + strand, within SMc00782 at 803.228 kb on + strand, within SMc00782 at 803.229 kb on - strand, within SMc00782 at 803.229 kb on - strand, within SMc00782 at 803.229 kb on - strand, within SMc00782 at 803.262 kb on - strand, within SMc00782 at 803.303 kb on + strand, within SMc00782 at 803.354 kb on + strand, within SMc00782 at 803.366 kb on + strand, within SMc00782 at 803.366 kb on + strand, within SMc00782 at 803.433 kb on + strand, within SMc00782 at 803.434 kb on - strand, within SMc00782 at 803.434 kb on - strand, within SMc00782 at 803.434 kb on - strand, within SMc00782 at 803.483 kb on + strand, within SMc00782 at 803.539 kb on + strand, within SMc00782 at 803.607 kb on - strand, within SMc00782 at 803.607 kb on - strand, within SMc00782 at 803.613 kb on - strand, within SMc00782 at 803.882 kb on + strand, within SMc00782 at 803.883 kb on - strand, within SMc00782 at 803.969 kb on + strand, within SMc00782 at 803.969 kb on + strand, within SMc00782 at 803.971 kb on + strand, within SMc00782 at 803.972 kb on - strand at 804.159 kb on + strand at 804.160 kb on - strand at 804.160 kb on - strand at 804.160 kb on - strand at 804.160 kb on - strand at 804.160 kb on - strand at 804.331 kb on + strand, within SMc00783 at 804.331 kb on + strand, within SMc00783 at 804.331 kb on + strand, within SMc00783 at 804.332 kb on - strand, within SMc00783 at 804.532 kb on - strand, within SMc00783 at 804.532 kb on - strand, within SMc00783 at 804.735 kb on - strand, within SMc00783 at 804.735 kb on - strand, within SMc00783 at 804.735 kb on - strand, within SMc00783 at 804.840 kb on - strand, within SMc00783 at 804.840 kb on - strand, within SMc00783 at 804.913 kb on - strand, within SMc00783 at 804.913 kb on - strand, within SMc00783 at 805.018 kb on - strand, within SMc00783 at 805.018 kb on - strand, within SMc00783
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 802,135 + SMc00781 0.55 +0.4 802,255 + SMc00781 0.63 +0.2 802,256 - SMc00781 0.63 +0.5 802,257 + SMc00781 0.63 +0.2 802,453 + SMc00781 0.76 +0.5 802,453 + SMc00781 0.76 -0.8 802,454 - SMc00781 0.76 +0.5 802,454 - SMc00781 0.76 +1.0 802,454 - SMc00781 0.76 +0.5 802,454 - -0.4 802,504 + SMc00781 0.79 +0.6 802,504 + SMc00781 0.79 +0.2 802,541 - SMc00781 0.82 -0.3 802,561 + SMc00781 0.83 +0.2 802,562 - SMc00781 0.83 +0.4 802,562 - SMc00781 0.83 -0.0 802,655 - SMc00781 0.89 +1.0 802,942 + +0.4 802,943 - +0.1 802,943 - +0.3 802,971 + +0.6 802,972 - -0.0 802,972 - +0.5 802,972 - +0.1 802,972 - -0.6 802,972 - +0.4 802,972 - +0.5 802,972 - -0.1 802,981 - +0.1 802,981 - -0.4 802,981 - -0.2 803,056 - -0.1 803,174 + -0.3 803,185 - SMc00782 0.10 +0.9 803,197 + SMc00782 0.11 -1.0 803,214 + SMc00782 0.13 +0.4 803,215 - SMc00782 0.13 -0.5 803,228 + SMc00782 0.14 +1.7 803,228 + SMc00782 0.14 +0.7 803,228 + SMc00782 0.14 +0.6 803,229 - SMc00782 0.14 +1.4 803,229 - SMc00782 0.14 +0.0 803,229 - SMc00782 0.14 +0.5 803,262 - SMc00782 0.17 -0.2 803,303 + SMc00782 0.21 +0.0 803,354 + SMc00782 0.25 -2.8 803,366 + SMc00782 0.26 -0.2 803,366 + SMc00782 0.26 -0.1 803,433 + SMc00782 0.32 -0.2 803,434 - SMc00782 0.33 -0.2 803,434 - SMc00782 0.33 +0.8 803,434 - SMc00782 0.33 +0.0 803,483 + SMc00782 0.37 +0.8 803,539 + SMc00782 0.42 -1.1 803,607 - SMc00782 0.48 +0.0 803,607 - SMc00782 0.48 +0.1 803,613 - SMc00782 0.49 -0.2 803,882 + SMc00782 0.73 -0.1 803,883 - SMc00782 0.73 +1.7 803,969 + SMc00782 0.81 +0.3 803,969 + SMc00782 0.81 +0.2 803,971 + SMc00782 0.81 +0.5 803,972 - +1.2 804,159 + +0.0 804,160 - +0.0 804,160 - +0.7 804,160 - +0.4 804,160 - -0.1 804,160 - -0.0 804,331 + SMc00783 0.15 -0.1 804,331 + SMc00783 0.15 -0.2 804,331 + SMc00783 0.15 -0.2 804,332 - SMc00783 0.15 -0.4 804,532 - SMc00783 0.34 -0.3 804,532 - SMc00783 0.34 -0.1 804,735 - SMc00783 0.53 +0.1 804,735 - SMc00783 0.53 +0.6 804,735 - SMc00783 0.53 +0.3 804,840 - SMc00783 0.63 +0.0 804,840 - SMc00783 0.63 +0.3 804,913 - SMc00783 0.70 -0.2 804,913 - SMc00783 0.70 +1.0 805,018 - SMc00783 0.80 -1.0 805,018 - SMc00783 0.80 -0.1
Or see this region's nucleotide sequence