Strain Fitness in Sinorhizobium meliloti 1021 around SMc00696

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00697 and SMc00696 overlap by 4 nucleotidesSMc00696 and SMc00695 are separated by 4 nucleotidesSMc00695 and SMc00694 are separated by 84 nucleotidesSMc00694 and SMc00693 overlap by 4 nucleotides SMc00697: SMc00697 - hypothetical protein, at 2,882,239 to 2,883,543 SMc00697 SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673 SMc00696 SMc00695: SMc00695 - shikimate kinase, at 2,884,678 to 2,885,256 SMc00695 SMc00694: SMc00694 - hypothetical protein, at 2,885,341 to 2,885,643 SMc00694 SMc00693: SMc00693 - hypothetical protein, at 2,885,640 to 2,885,915 SMc00693 Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -1 0 1at 2882.814 kb on + strand, within SMc00697at 2882.815 kb on - strand, within SMc00697at 2882.815 kb on - strand, within SMc00697at 2883.101 kb on - strand, within SMc00697at 2883.358 kb on + strand, within SMc00697at 2883.358 kb on + strand, within SMc00697at 2883.359 kb on - strand, within SMc00697at 2883.359 kb on - strand, within SMc00697at 2883.409 kb on - strand, within SMc00697at 2883.472 kb on - strandat 2883.510 kb on - strandat 2885.338 kb on + strandat 2885.339 kb on - strandat 2885.339 kb on - strandat 2885.339 kb on - strandat 2885.342 kb on + strandat 2885.366 kb on + strandat 2885.397 kb on + strand, within SMc00694at 2885.397 kb on + strand, within SMc00694at 2885.397 kb on + strand, within SMc00694at 2885.401 kb on + strand, within SMc00694at 2885.402 kb on - strand, within SMc00694at 2885.402 kb on - strand, within SMc00694at 2885.423 kb on + strand, within SMc00694at 2885.424 kb on - strand, within SMc00694at 2885.458 kb on - strand, within SMc00694at 2885.458 kb on - strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.568 kb on + strand, within SMc00694at 2885.600 kb on - strand, within SMc00694at 2885.600 kb on - strand, within SMc00694

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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2,882,814 + SMc00697 0.44 -0.1
2,882,815 - SMc00697 0.44 -0.3
2,882,815 - SMc00697 0.44 -0.1
2,883,101 - SMc00697 0.66 +0.0
2,883,358 + SMc00697 0.86 -0.0
2,883,358 + SMc00697 0.86 -0.2
2,883,359 - SMc00697 0.86 -0.2
2,883,359 - SMc00697 0.86 +0.2
2,883,409 - SMc00697 0.90 -0.2
2,883,472 - +0.7
2,883,510 - -0.1
2,885,338 + -0.2
2,885,339 - -0.3
2,885,339 - -0.1
2,885,339 - +0.0
2,885,342 + +0.8
2,885,366 + -1.2
2,885,397 + SMc00694 0.18 +0.2
2,885,397 + SMc00694 0.18 +0.3
2,885,397 + SMc00694 0.18 +0.7
2,885,401 + SMc00694 0.20 +0.0
2,885,402 - SMc00694 0.20 +0.5
2,885,402 - SMc00694 0.20 +0.8
2,885,423 + SMc00694 0.27 +0.1
2,885,424 - SMc00694 0.27 +0.1
2,885,458 - SMc00694 0.39 +0.2
2,885,458 - SMc00694 0.39 +0.1
2,885,546 + SMc00694 0.68 -0.0
2,885,546 + SMc00694 0.68 -1.1
2,885,546 + SMc00694 0.68 +0.3
2,885,547 - SMc00694 0.68 -0.3
2,885,547 - SMc00694 0.68 +0.2
2,885,547 - SMc00694 0.68 +0.2
2,885,568 + SMc00694 0.75 -0.3
2,885,600 - SMc00694 0.85 +0.5
2,885,600 - SMc00694 0.85 +0.0

Or see this region's nucleotide sequence