Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00576 and SMc00577 are separated by 3 nucleotides SMc00577 and SMc00578 are separated by 62 nucleotides SMc00578 and SMc00579 are separated by 221 nucleotides
SMc00576: SMc00576 - hypothetical protein, at 1,246,291 to 1,247,178
SMc00576
SMc00577: SMc00577 - guanylate kinase, at 1,247,182 to 1,247,841
SMc00577
SMc00578: SMc00578 - hypothetical protein, at 1,247,904 to 1,248,032
SMc00578
SMc00579: SMc00579 - dimethyladenosine transferase, at 1,248,254 to 1,249,078
SMc00579
Position (kb)
1247
1248 Strain fitness (log2 ratio)
-1
0
1 at 1246.203 kb on - strand at 1246.203 kb on - strand at 1246.263 kb on + strand at 1246.425 kb on + strand, within SMc00576 at 1246.426 kb on - strand, within SMc00576 at 1246.426 kb on - strand, within SMc00576 at 1246.611 kb on + strand, within SMc00576 at 1246.695 kb on - strand, within SMc00576 at 1246.775 kb on + strand, within SMc00576 at 1246.775 kb on + strand, within SMc00576 at 1246.776 kb on - strand, within SMc00576 at 1247.076 kb on + strand at 1248.057 kb on - strand at 1248.111 kb on - strand at 1248.111 kb on - strand at 1248.574 kb on - strand, within SMc00579 at 1248.574 kb on - strand, within SMc00579 at 1248.574 kb on - strand, within SMc00579
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 1,246,203 - +0.4 1,246,203 - -0.9 1,246,263 + -0.8 1,246,425 + SMc00576 0.15 -1.6 1,246,426 - SMc00576 0.15 -0.1 1,246,426 - SMc00576 0.15 +0.1 1,246,611 + SMc00576 0.36 -0.3 1,246,695 - SMc00576 0.45 -0.2 1,246,775 + SMc00576 0.55 -1.4 1,246,775 + SMc00576 0.55 -1.5 1,246,776 - SMc00576 0.55 +0.1 1,247,076 + -1.0 1,248,057 - +0.1 1,248,111 - +1.0 1,248,111 - -0.2 1,248,574 - SMc00579 0.39 -0.9 1,248,574 - SMc00579 0.39 -0.4 1,248,574 - SMc00579 0.39 -1.3
Or see this region's nucleotide sequence