Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0705 and SMa0707 are separated by 51 nucleotides SMa0707 and SMa0708 overlap by 4 nucleotides
SMa0705: SMa0705 - DgoK2 2-dehydro-3-deoxygalactonokinase, at 380,966 to 381,907
SMa0705
SMa0707: SMa0707 - dihydrodipicolinate synthase, at 381,959 to 382,921
SMa0707
SMa0708: SMa0708 - enolase, at 382,918 to 384,087
SMa0708
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1
2 at 380.967 kb on + strand at 381.076 kb on - strand, within SMa0705 at 381.153 kb on - strand, within SMa0705 at 381.381 kb on + strand, within SMa0705 at 381.382 kb on - strand, within SMa0705 at 381.382 kb on - strand, within SMa0705 at 381.473 kb on + strand, within SMa0705 at 381.473 kb on + strand, within SMa0705 at 381.474 kb on - strand, within SMa0705 at 381.651 kb on + strand, within SMa0705 at 381.651 kb on + strand, within SMa0705 at 381.652 kb on - strand, within SMa0705 at 381.945 kb on + strand at 381.945 kb on + strand at 381.946 kb on - strand at 381.946 kb on - strand at 381.946 kb on - strand at 381.946 kb on - strand at 382.484 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.601 kb on + strand, within SMa0707 at 382.674 kb on - strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.748 kb on + strand, within SMa0707 at 382.809 kb on + strand, within SMa0707 at 382.809 kb on + strand, within SMa0707 at 382.810 kb on - strand, within SMa0707 at 382.810 kb on - strand, within SMa0707 at 382.978 kb on + strand at 382.979 kb on - strand at 382.979 kb on - strand at 383.024 kb on - strand at 383.028 kb on - strand at 383.028 kb on - strand at 383.054 kb on - strand, within SMa0708 at 383.233 kb on + strand, within SMa0708 at 383.233 kb on + strand, within SMa0708 at 383.258 kb on - strand, within SMa0708 at 383.259 kb on + strand, within SMa0708 at 383.272 kb on + strand, within SMa0708 at 383.273 kb on - strand, within SMa0708 at 383.386 kb on + strand, within SMa0708 at 383.386 kb on + strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.388 kb on + strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.740 kb on - strand, within SMa0708 at 383.796 kb on + strand, within SMa0708 at 383.797 kb on - strand, within SMa0708 at 383.830 kb on + strand, within SMa0708 at 383.831 kb on - strand, within SMa0708 at 383.831 kb on - strand, within SMa0708
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 380,967 + +0.3 381,076 - SMa0705 0.12 -0.4 381,153 - SMa0705 0.20 -0.2 381,381 + SMa0705 0.44 -0.6 381,382 - SMa0705 0.44 +0.4 381,382 - SMa0705 0.44 -0.4 381,473 + SMa0705 0.54 -0.0 381,473 + SMa0705 0.54 -0.3 381,474 - SMa0705 0.54 +0.1 381,651 + SMa0705 0.73 -0.0 381,651 + SMa0705 0.73 +0.4 381,652 - SMa0705 0.73 +0.2 381,945 + +0.8 381,945 + +0.8 381,946 - +1.5 381,946 - +0.1 381,946 - +0.0 381,946 - +0.9 382,484 + SMa0707 0.55 +0.0 382,552 + SMa0707 0.62 -0.4 382,552 + SMa0707 0.62 +0.4 382,552 + SMa0707 0.62 -0.6 382,552 + SMa0707 0.62 -0.1 382,601 + SMa0707 0.67 +0.3 382,674 - SMa0707 0.74 -0.3 382,722 + SMa0707 0.79 +0.1 382,722 + SMa0707 0.79 -0.6 382,722 + SMa0707 0.79 -0.6 382,748 + SMa0707 0.82 +0.1 382,809 + SMa0707 0.88 +0.2 382,809 + SMa0707 0.88 -0.6 382,810 - SMa0707 0.88 +2.0 382,810 - SMa0707 0.88 +0.3 382,978 + +0.4 382,979 - -0.6 382,979 - -1.2 383,024 - -0.3 383,028 - +0.7 383,028 - +0.5 383,054 - SMa0708 0.12 -0.4 383,233 + SMa0708 0.27 +0.4 383,233 + SMa0708 0.27 +0.1 383,258 - SMa0708 0.29 -0.2 383,259 + SMa0708 0.29 -1.6 383,272 + SMa0708 0.30 +0.6 383,273 - SMa0708 0.30 +0.2 383,386 + SMa0708 0.40 +0.3 383,386 + SMa0708 0.40 -0.1 383,387 - SMa0708 0.40 +0.4 383,387 - SMa0708 0.40 +0.1 383,387 - SMa0708 0.40 -0.5 383,388 + SMa0708 0.40 +0.2 383,389 - SMa0708 0.40 -0.8 383,389 - SMa0708 0.40 -0.2 383,389 - SMa0708 0.40 -0.3 383,389 - SMa0708 0.40 -0.1 383,739 + SMa0708 0.70 -0.0 383,739 + SMa0708 0.70 +0.8 383,739 + SMa0708 0.70 -0.3 383,739 + SMa0708 0.70 +1.0 383,740 - SMa0708 0.70 -0.1 383,796 + SMa0708 0.75 -0.6 383,797 - SMa0708 0.75 +0.7 383,830 + SMa0708 0.78 -0.4 383,831 - SMa0708 0.78 +0.2 383,831 - SMa0708 0.78 -0.5
Or see this region's nucleotide sequence