Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0260 and SMa0263 are separated by 16 nucleotides SMa0263 and SMa0265 are separated by 21 nucleotides
SMa0260: SMa0260 - GabD3 succinate-semialdehyde dehdyrogenase, at 146,683 to 148,146
SMa0260
SMa0263: SMa0263 - alcohol dehydrogenase, at 148,163 to 149,362
SMa0263
SMa0265: SMa0265 - dehydrogenase, at 149,384 to 150,388
SMa0265
Position (kb) 148
149
150 Strain fitness (log2 ratio) -1
0
1 at 147.245 kb on + strand, within SMa0260 at 147.245 kb on + strand, within SMa0260 at 147.409 kb on + strand, within SMa0260 at 147.410 kb on - strand, within SMa0260 at 147.484 kb on + strand, within SMa0260 at 147.566 kb on + strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.718 kb on - strand, within SMa0260 at 147.804 kb on - strand, within SMa0260 at 147.853 kb on + strand, within SMa0260 at 148.027 kb on - strand at 148.051 kb on + strand at 148.085 kb on + strand at 148.086 kb on - strand at 148.253 kb on + strand at 148.458 kb on + strand, within SMa0263 at 148.459 kb on - strand, within SMa0263 at 148.467 kb on - strand, within SMa0263 at 148.892 kb on - strand, within SMa0263 at 148.993 kb on - strand, within SMa0263 at 149.001 kb on + strand, within SMa0263 at 149.004 kb on + strand, within SMa0263 at 149.004 kb on + strand, within SMa0263 at 149.005 kb on - strand, within SMa0263 at 149.354 kb on + strand at 149.368 kb on - strand at 149.404 kb on + strand at 149.850 kb on + strand, within SMa0265 at 150.021 kb on + strand, within SMa0265 at 150.024 kb on + strand, within SMa0265 at 150.025 kb on - strand at 150.025 kb on - strand, within SMa0265 at 150.085 kb on + strand, within SMa0265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 147,245 + SMa0260 0.38 +0.7 147,245 + SMa0260 0.38 +0.3 147,409 + SMa0260 0.50 -0.4 147,410 - SMa0260 0.50 +0.1 147,484 + SMa0260 0.55 -0.1 147,566 + SMa0260 0.60 -0.1 147,567 - SMa0260 0.60 +0.2 147,567 - SMa0260 0.60 -0.4 147,567 - SMa0260 0.60 -0.6 147,567 - SMa0260 0.60 +1.7 147,718 - SMa0260 0.71 -0.3 147,804 - SMa0260 0.77 -1.4 147,853 + SMa0260 0.80 +0.5 148,027 - -1.2 148,051 + +1.5 148,085 + -0.4 148,086 - -0.3 148,253 + +0.0 148,458 + SMa0263 0.25 +0.1 148,459 - SMa0263 0.25 +0.2 148,467 - SMa0263 0.25 +0.1 148,892 - SMa0263 0.61 +0.1 148,993 - SMa0263 0.69 -0.0 149,001 + SMa0263 0.70 -0.0 149,004 + SMa0263 0.70 +0.0 149,004 + SMa0263 0.70 -0.1 149,005 - SMa0263 0.70 +0.1 149,354 + -0.2 149,368 - -0.1 149,404 + +0.4 149,850 + SMa0265 0.46 +0.7 150,021 + SMa0265 0.63 +0.9 150,024 + SMa0265 0.64 +0.5 150,025 - -0.4 150,025 - SMa0265 0.64 -0.2 150,085 + SMa0265 0.70 -0.7
Or see this region's nucleotide sequence