Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21357

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21356 and SM_b21357 are separated by 97 nucleotidesSM_b21357 and SM_b21358 are separated by 52 nucleotidesSM_b21358 and SM_b21359 are separated by 141 nucleotides SM_b21356: SM_b21356 - hypothetical protein, at 1,022,177 to 1,023,169 _b21356 SM_b21357: SM_b21357 - hypothetical protein, at 1,023,267 to 1,023,785 _b21357 SM_b21358: SM_b21358 - hypothetical protein, at 1,023,838 to 1,024,332 _b21358 SM_b21359: SM_b21359 - LysR family transcriptional regulator, at 1,024,474 to 1,024,932 _b21359 Position (kb) 1023 1024Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1022.335 kb on - strand, within SM_b21356at 1022.346 kb on + strand, within SM_b21356at 1022.346 kb on + strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.354 kb on + strand, within SM_b21356at 1022.355 kb on - strand, within SM_b21356at 1022.739 kb on + strandat 1022.748 kb on - strand, within SM_b21356at 1022.902 kb on + strand, within SM_b21356at 1022.942 kb on + strand, within SM_b21356at 1022.943 kb on - strand, within SM_b21356at 1022.966 kb on + strand, within SM_b21356at 1022.966 kb on + strand, within SM_b21356at 1022.967 kb on - strand, within SM_b21356at 1022.967 kb on - strand, within SM_b21356at 1022.979 kb on - strand, within SM_b21356at 1023.220 kb on + strandat 1023.261 kb on + strandat 1023.262 kb on - strandat 1023.262 kb on - strandat 1023.376 kb on + strand, within SM_b21357at 1023.376 kb on + strand, within SM_b21357at 1023.376 kb on + strand, within SM_b21357at 1023.376 kb on + strand, within SM_b21357at 1023.377 kb on - strand, within SM_b21357at 1023.377 kb on - strand, within SM_b21357at 1023.428 kb on + strand, within SM_b21357at 1023.429 kb on - strand, within SM_b21357at 1023.429 kb on - strand, within SM_b21357at 1023.637 kb on + strand, within SM_b21357at 1023.637 kb on + strand, within SM_b21357at 1023.638 kb on - strand, within SM_b21357at 1023.700 kb on - strand, within SM_b21357at 1023.783 kb on + strandat 1023.783 kb on + strandat 1023.783 kb on + strandat 1023.844 kb on + strandat 1023.859 kb on + strandat 1023.860 kb on - strandat 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.047 kb on - strand, within SM_b21358at 1024.047 kb on - strandat 1024.047 kb on - strand, within SM_b21358at 1024.231 kb on - strand, within SM_b21358at 1024.345 kb on - strandat 1024.453 kb on + strandat 1024.453 kb on + strandat 1024.461 kb on + strandat 1024.462 kb on - strandat 1024.467 kb on + strandat 1024.468 kb on - strandat 1024.468 kb on - strandat 1024.496 kb on - strandat 1024.496 kb on - strandat 1024.496 kb on - strandat 1024.498 kb on + strandat 1024.498 kb on + strandat 1024.499 kb on - strandat 1024.499 kb on - strandat 1024.499 kb on - strandat 1024.528 kb on + strand, within SM_b21359at 1024.529 kb on - strand, within SM_b21359at 1024.619 kb on + strand, within SM_b21359at 1024.620 kb on - strand, within SM_b21359at 1024.667 kb on - strand, within SM_b21359

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,022,335 - SM_b21356 0.16 -0.6
1,022,346 + SM_b21356 0.17 +1.4
1,022,346 + SM_b21356 0.17 -0.6
1,022,347 - SM_b21356 0.17 -0.1
1,022,347 - SM_b21356 0.17 -0.3
1,022,347 - SM_b21356 0.17 +0.4
1,022,347 - SM_b21356 0.17 +0.0
1,022,354 + SM_b21356 0.18 +0.4
1,022,355 - SM_b21356 0.18 -0.8
1,022,739 + +1.0
1,022,748 - SM_b21356 0.58 +0.5
1,022,902 + SM_b21356 0.73 +0.5
1,022,942 + SM_b21356 0.77 -1.3
1,022,943 - SM_b21356 0.77 +0.3
1,022,966 + SM_b21356 0.79 +0.2
1,022,966 + SM_b21356 0.79 -1.3
1,022,967 - SM_b21356 0.80 -0.0
1,022,967 - SM_b21356 0.80 +0.1
1,022,979 - SM_b21356 0.81 -0.4
1,023,220 + -0.1
1,023,261 + +1.8
1,023,262 - -0.2
1,023,262 - +0.8
1,023,376 + SM_b21357 0.21 +0.0
1,023,376 + SM_b21357 0.21 +0.3
1,023,376 + SM_b21357 0.21 +0.1
1,023,376 + SM_b21357 0.21 +0.8
1,023,377 - SM_b21357 0.21 -0.5
1,023,377 - SM_b21357 0.21 -0.8
1,023,428 + SM_b21357 0.31 +0.5
1,023,429 - SM_b21357 0.31 +0.2
1,023,429 - SM_b21357 0.31 -0.1
1,023,637 + SM_b21357 0.71 -1.0
1,023,637 + SM_b21357 0.71 -5.2
1,023,638 - SM_b21357 0.71 +0.7
1,023,700 - SM_b21357 0.83 -0.7
1,023,783 + +0.4
1,023,783 + -0.2
1,023,783 + -0.1
1,023,844 + +0.1
1,023,859 + -0.3
1,023,860 - +0.9
1,024,046 + SM_b21358 0.42 -0.0
1,024,046 + SM_b21358 0.42 +0.2
1,024,046 + SM_b21358 0.42 -0.8
1,024,046 + SM_b21358 0.42 -0.1
1,024,046 + SM_b21358 0.42 -0.1
1,024,047 - SM_b21358 0.42 +1.3
1,024,047 - +0.2
1,024,047 - SM_b21358 0.42 -0.0
1,024,231 - SM_b21358 0.79 +0.6
1,024,345 - -1.4
1,024,453 + +0.7
1,024,453 + +0.3
1,024,461 + -0.2
1,024,462 - -0.1
1,024,467 + +0.1
1,024,468 - -0.6
1,024,468 - -0.2
1,024,496 - +0.1
1,024,496 - -0.5
1,024,496 - +0.0
1,024,498 + -0.0
1,024,498 + -0.3
1,024,499 - +0.6
1,024,499 - +0.2
1,024,499 - -0.8
1,024,528 + SM_b21359 0.12 -0.4
1,024,529 - SM_b21359 0.12 +0.7
1,024,619 + SM_b21359 0.32 +0.4
1,024,620 - SM_b21359 0.32 -1.7
1,024,667 - SM_b21359 0.42 +0.3

Or see this region's nucleotide sequence