Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21035

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21034 and SM_b21035 are separated by 665 nucleotidesSM_b21035 and SM_b21036 are separated by 138 nucleotidesSM_b21036 and SM_b21037 are separated by 162 nucleotides SM_b21034: SM_b21034 - hypothetical protein, at 652,630 to 652,914 _b21034 SM_b21035: SM_b21035 - hypothetical protein, at 653,580 to 653,798 _b21035 SM_b21036: SM_b21036 - hypothetical protein, at 653,937 to 654,485 _b21036 SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243 _b21037 Position (kb) 653 654Strain fitness (log2 ratio) -2 -1 0 1 2at 652.667 kb on - strand, within SM_b21034at 652.734 kb on - strand, within SM_b21034at 652.734 kb on - strand, within SM_b21034at 652.748 kb on + strand, within SM_b21034at 652.748 kb on + strand, within SM_b21034at 652.749 kb on - strand, within SM_b21034at 652.749 kb on - strand, within SM_b21034at 652.865 kb on + strand, within SM_b21034at 652.944 kb on + strandat 652.944 kb on + strandat 652.945 kb on - strandat 652.964 kb on - strandat 653.020 kb on + strandat 653.047 kb on - strandat 653.047 kb on - strandat 653.104 kb on + strandat 653.105 kb on - strandat 653.259 kb on - strandat 653.352 kb on + strandat 653.353 kb on - strandat 653.353 kb on - strandat 653.353 kb on - strandat 653.353 kb on - strandat 653.353 kb on - strandat 653.364 kb on + strandat 653.364 kb on + strandat 653.364 kb on + strandat 653.365 kb on - strandat 653.365 kb on - strandat 653.372 kb on + strandat 653.373 kb on - strandat 653.438 kb on + strandat 653.458 kb on + strandat 653.459 kb on - strandat 653.459 kb on - strandat 653.488 kb on + strandat 653.489 kb on - strandat 653.494 kb on - strandat 653.581 kb on + strandat 653.581 kb on + strandat 653.672 kb on + strand, within SM_b21035at 653.673 kb on - strand, within SM_b21035at 653.673 kb on - strand, within SM_b21035at 653.771 kb on + strand, within SM_b21035at 653.772 kb on - strand, within SM_b21035at 653.772 kb on - strand, within SM_b21035at 653.954 kb on + strandat 653.954 kb on + strandat 653.954 kb on + strandat 653.954 kb on + strandat 653.992 kb on - strand, within SM_b21036at 654.533 kb on + strandat 654.533 kb on + strandat 654.533 kb on + strandat 654.534 kb on - strandat 654.534 kb on - strandat 654.541 kb on + strandat 654.542 kb on - strandat 654.542 kb on - strandat 654.621 kb on - strandat 654.762 kb on - strandat 654.768 kb on + strandat 654.768 kb on + strandat 654.769 kb on - strandat 654.769 kb on - strandat 654.795 kb on + strandat 654.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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652,667 - SM_b21034 0.13 -0.7
652,734 - SM_b21034 0.36 +0.8
652,734 - SM_b21034 0.36 -0.6
652,748 + SM_b21034 0.41 +0.1
652,748 + SM_b21034 0.41 -0.3
652,749 - SM_b21034 0.42 +0.3
652,749 - SM_b21034 0.42 +0.4
652,865 + SM_b21034 0.82 +0.1
652,944 + +0.2
652,944 + +0.6
652,945 - -0.7
652,964 - -0.5
653,020 + +0.1
653,047 - -0.2
653,047 - -0.2
653,104 + -0.6
653,105 - +0.3
653,259 - +0.7
653,352 + -0.5
653,353 - -0.3
653,353 - +0.9
653,353 - +0.3
653,353 - +0.1
653,353 - +0.3
653,364 + +0.9
653,364 + +0.1
653,364 + +0.0
653,365 - +0.8
653,365 - -1.1
653,372 + +0.2
653,373 - -0.4
653,438 + -0.9
653,458 + +0.1
653,459 - +0.2
653,459 - -0.3
653,488 + -0.4
653,489 - +0.3
653,494 - -0.1
653,581 + -0.4
653,581 + -0.9
653,672 + SM_b21035 0.42 -1.9
653,673 - SM_b21035 0.42 -1.0
653,673 - SM_b21035 0.42 -1.0
653,771 + SM_b21035 0.87 -0.9
653,772 - SM_b21035 0.88 -1.7
653,772 - SM_b21035 0.88 -1.0
653,954 + +2.1
653,954 + -0.6
653,954 + -0.3
653,954 + +0.0
653,992 - SM_b21036 0.10 +0.0
654,533 + +0.2
654,533 + -0.4
654,533 + +0.0
654,534 - +0.7
654,534 - +0.2
654,541 + -1.2
654,542 - +1.1
654,542 - -2.1
654,621 - -0.3
654,762 - +0.2
654,768 + +0.6
654,768 + +0.1
654,769 - -1.1
654,769 - -0.4
654,795 + -0.1
654,796 - -0.1

Or see this region's nucleotide sequence