Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37420

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,872,130	+		RR42_RS37415	0.10	-0.4
3,872,130	+		RR42_RS37415	0.10	+0.6
3,872,204	+		RR42_RS37415	0.19	-0.4
3,872,205	-		RR42_RS37415	0.19	+1.1
3,872,207	+		RR42_RS37415	0.20	-0.1
3,872,228	+		RR42_RS37415	0.22	+0.1
3,872,229	-		RR42_RS37415	0.22	-2.0
3,872,229	-		RR42_RS37415	0.22	-2.1
3,872,282	+		RR42_RS37415	0.29	+0.6
3,872,284	+		RR42_RS37415	0.29	-0.0
3,872,471	+		RR42_RS37415	0.53	-0.2
3,872,472	-		RR42_RS37415	0.53	+0.1
3,872,472	-		RR42_RS37415	0.53	+0.9
3,872,524	+		RR42_RS37415	0.59	-3.3
3,872,524	+		RR42_RS37415	0.59	+1.0
3,872,524	+		RR42_RS37415	0.59	+0.5
3,872,525	-		RR42_RS37415	0.60	+0.5
3,872,525	-		RR42_RS37415	0.60	-1.3
3,872,570	+		RR42_RS37415	0.65	-1.3
3,872,606	+		RR42_RS37415	0.70	-0.4
3,872,607	-		RR42_RS37415	0.70	-0.8
3,872,607	-		RR42_RS37415	0.70	-3.4
3,872,607	-		RR42_RS37415	0.70	+0.3
3,872,829	+				-0.3
3,872,830	-				+1.7
3,872,953	+				+0.4
3,872,953	+				-1.8
3,872,953	+				-0.2
3,872,954	-				-1.0
3,872,954	-				-3.0
3,873,025	+				-0.8
3,873,070	+				+1.1
3,873,070	+				+0.1
3,873,070	+				-0.4
3,873,237	+		RR42_RS37420	0.30	-1.1
3,873,237	+		RR42_RS37420	0.30	-0.1
3,873,238	-		RR42_RS37420	0.30	-0.8
3,873,369	+		RR42_RS37420	0.48	+0.4
3,873,369	+		RR42_RS37420	0.48	+0.1
3,873,369	+		RR42_RS37420	0.48	-1.1
3,873,733	-				-1.1
3,873,733	-				-1.4
3,873,733	-				-1.5
3,873,822	+				-0.9
3,873,822	+				-1.1
3,873,822	+				+1.3
3,873,822	+				-0.6
3,873,823	-				-0.8
3,873,823	-				+1.5
3,873,823	-				-0.5
3,873,823	-				+1.0
3,873,827	+				+1.5
3,873,828	-				-0.6
3,874,015	+		RR42_RS37425	0.55	+0.4
3,874,015	+		RR42_RS37425	0.55	+2.3
3,874,024	+		RR42_RS37425	0.58	-0.8
3,874,024	+		RR42_RS37425	0.58	+1.2
3,874,024	+		RR42_RS37425	0.58	+1.8
3,874,024	+		RR42_RS37425	0.58	+0.6
3,874,025	-		RR42_RS37425	0.58	-2.2
3,874,025	-		RR42_RS37425	0.58	-0.4
3,874,280	+				+0.6
3,874,280	+				+0.6
3,874,281	-				-1.9
3,874,281	-				-1.4
3,874,380	+		RR42_RS37430	0.19	-0.5
3,874,419	+		RR42_RS37430	0.24	+0.9
3,874,420	-		RR42_RS37430	0.24	-0.8
3,874,534	-		RR42_RS37430	0.41	-0.4
3,874,534	-		RR42_RS37430	0.41	+0.7
3,874,584	+		RR42_RS37430	0.48	-2.1
3,874,677	+		RR42_RS37430	0.61	+0.6
3,874,705	-		RR42_RS37430	0.65	+3.2