Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37170

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,798,857	+		RR42_RS37165	0.27	+0.6
3,798,857	+		RR42_RS37165	0.27	+0.9
3,798,857	+		RR42_RS37165	0.27	+0.2
3,798,858	-		RR42_RS37165	0.27	-2.1
3,798,861	+		RR42_RS37165	0.28	+0.3
3,798,861	+		RR42_RS37165	0.28	+0.4
3,798,861	+		RR42_RS37165	0.28	-0.6
3,798,861	+		RR42_RS37165	0.28	+0.1
3,798,861	+		RR42_RS37165	0.28	+0.6
3,798,861	+		RR42_RS37165	0.28	+0.6
3,798,861	+		RR42_RS37165	0.28	-2.2
3,798,861	+		RR42_RS37165	0.28	-1.3
3,798,861	+		RR42_RS37165	0.28	+0.4
3,798,862	-		RR42_RS37165	0.28	+1.0
3,798,862	-		RR42_RS37165	0.28	-1.9
3,798,862	-		RR42_RS37165	0.28	-0.0
3,798,862	-		RR42_RS37165	0.28	+1.0
3,798,862	-		RR42_RS37165	0.28	+2.0
3,798,862	-		RR42_RS37165	0.28	-0.8
3,798,862	-		RR42_RS37165	0.28	-0.2
3,798,866	-		RR42_RS37165	0.28	-1.1
3,798,978	+		RR42_RS37165	0.44	-2.2
3,799,025	+		RR42_RS37165	0.50	-0.3
3,799,164	+		RR42_RS37165	0.69	+0.2
3,799,164	+		RR42_RS37165	0.69	-1.6
3,799,164	+		RR42_RS37165	0.69	+0.3
3,799,164	+		RR42_RS37165	0.69	-0.4
3,799,164	+		RR42_RS37165	0.69	-0.5
3,799,164	+		RR42_RS37165	0.69	+0.6
3,799,164	+		RR42_RS37165	0.69	+0.7
3,799,164	+		RR42_RS37165	0.69	-0.4
3,799,164	+		RR42_RS37165	0.69	-0.2
3,799,165	-		RR42_RS37165	0.69	-1.1
3,799,165	-		RR42_RS37165	0.69	+1.5
3,799,165	-		RR42_RS37165	0.69	+0.5
3,799,165	-		RR42_RS37165	0.69	+0.7
3,799,225	+		RR42_RS37165	0.77	-2.2
3,799,225	+		RR42_RS37165	0.77	-0.4
3,799,225	+		RR42_RS37165	0.77	+1.1
3,799,225	+		RR42_RS37165	0.77	+0.9
3,799,225	+		RR42_RS37165	0.77	+0.8
3,799,225	+		RR42_RS37165	0.77	-1.9
3,799,225	+		RR42_RS37165	0.77	-1.9
3,799,226	-		RR42_RS37165	0.77	+0.4
3,799,226	-		RR42_RS37165	0.77	-0.1
3,799,239	+		RR42_RS37165	0.79	-0.2
3,799,239	+		RR42_RS37165	0.79	+1.9
3,799,239	+		RR42_RS37165	0.79	-0.2
3,799,240	-		RR42_RS37165	0.79	+0.8
3,799,240	-		RR42_RS37165	0.79	-1.9
3,799,285	+		RR42_RS37165	0.85	+0.6
3,799,286	-		RR42_RS37165	0.85	+0.1
3,799,286	-		RR42_RS37165	0.85	+1.0
3,799,328	+				-0.4
3,799,329	-				+0.3
3,799,424	+				+0.2
3,799,424	+				-1.9
3,799,424	+				-1.3
3,799,424	+				+0.4
3,799,425	-				-1.8
3,799,425	-				-1.2
3,799,500	-				-0.4
3,799,531	+				+0.1
3,799,532	-				-0.0
3,799,532	-				-0.6
3,799,573	+				-0.2
3,799,573	+				-0.8
3,799,573	+				+1.2
3,799,573	+				-2.8
3,799,573	+				+1.5
3,799,574	-				-0.1
3,799,574	-				+0.7
3,799,574	-				+0.3
3,799,656	+				+0.2
3,799,670	+				-3.2
3,799,671	-				+0.3
3,799,671	-				+0.2
3,799,671	-				-0.5
3,799,786	+		RR42_RS37170	0.23	-0.7
3,799,787	-		RR42_RS37170	0.24	+0.2
3,799,787	-		RR42_RS37170	0.24	-1.1
3,799,836	-		RR42_RS37170	0.43	-1.0
3,799,921	-		RR42_RS37170	0.78	-2.4
3,799,969	+				-2.5
3,799,970	-				+0.7
3,799,972	+				+1.3
3,799,973	-				-0.8
3,799,973	-				-0.3
3,799,978	-				-0.9
3,800,038	-				-0.7
3,800,043	+				-3.0
3,800,095	+				-0.6
3,800,095	+				-2.2
3,800,095	+				-0.2
3,800,096	-				+1.2
3,800,096	-				+1.0
3,800,097	+				+0.5
3,800,098	-				+0.6
3,800,098	-				+1.8
3,800,104	+				+0.3
3,800,104	+				+0.9
3,800,122	-				+0.3
3,800,136	+		RR42_RS37175	0.10	-0.6
3,800,192	+		RR42_RS37175	0.16	+0.7
3,800,193	-		RR42_RS37175	0.16	+0.7
3,800,272	-		RR42_RS37175	0.25	-0.5
3,800,287	+		RR42_RS37175	0.26	-0.6
3,800,287	+		RR42_RS37175	0.26	+1.1
3,800,321	+		RR42_RS37175	0.30	+0.2
3,800,321	+		RR42_RS37175	0.30	+0.0
3,800,321	+		RR42_RS37175	0.30	-0.3
3,800,321	+		RR42_RS37175	0.30	-0.3
3,800,322	-		RR42_RS37175	0.30	-2.5
3,800,322	-		RR42_RS37175	0.30	-1.2
3,800,322	-		RR42_RS37175	0.30	-0.7
3,800,322	-		RR42_RS37175	0.30	+0.1
3,800,348	+		RR42_RS37175	0.33	+0.3
3,800,348	+		RR42_RS37175	0.33	+0.3
3,800,349	-		RR42_RS37175	0.33	+0.2
3,800,349	-		RR42_RS37175	0.33	+0.4
3,800,349	-		RR42_RS37175	0.33	-0.4
3,800,349	-		RR42_RS37175	0.33	-1.3
3,800,400	+		RR42_RS37175	0.38	-1.1
3,800,401	-		RR42_RS37175	0.38	-2.4
3,800,401	-		RR42_RS37175	0.38	+0.6
3,800,401	-		RR42_RS37175	0.38	-0.9
3,800,455	-		RR42_RS37175	0.44	-1.8
3,800,455	-		RR42_RS37175	0.44	+0.6
3,800,473	+		RR42_RS37175	0.46	+1.0
3,800,473	+		RR42_RS37175	0.46	-3.3
3,800,479	+		RR42_RS37175	0.47	-2.9
3,800,486	-		RR42_RS37175	0.48	+0.1
3,800,654	+		RR42_RS37175	0.66	+0.3
3,800,740	+		RR42_RS37175	0.75	+1.2
3,800,758	+		RR42_RS37175	0.77	+0.8
3,800,758	+		RR42_RS37175	0.77	+0.6
3,800,758	+		RR42_RS37175	0.77	+0.1
3,800,758	+		RR42_RS37175	0.77	+1.9
3,800,758	+		RR42_RS37175	0.77	-0.3
3,800,867	+		RR42_RS37175	0.88	+0.2
3,800,952	+				-0.7
3,800,966	-				-3.4
3,800,966	-				+0.9