Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37085

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,782,689	+				+1.7
3,782,690	-				-0.4
3,782,705	-				-0.2
3,782,715	+				-1.6
3,782,715	+				-1.2
3,782,725	+				+0.8
3,782,849	+				+1.2
3,782,850	-				-0.8
3,782,850	-				+1.4
3,782,892	-				-0.6
3,782,892	-				-1.0
3,782,893	+				-1.9
3,782,894	-				-1.5
3,782,984	+				-0.2
3,783,114	-				+1.9
3,783,153	+				-0.4
3,783,154	-				+0.5
3,783,330	-				-1.8
3,783,330	-				-2.3
3,783,330	-				-1.8
3,783,330	-				+0.3
3,783,375	+				-2.3
3,783,375	+				-0.4
3,783,456	-				-3.5
3,783,478	+				-1.1
3,783,478	+				-2.9
3,783,479	-				-0.3
3,783,479	-				-0.7
3,783,516	+				-3.7
3,783,588	-				+0.2
3,783,608	-				-1.1
3,783,618	+				-0.4
3,783,630	+				+2.0
3,783,630	+				+0.9
3,783,630	+				+0.7
3,783,630	+				-2.4
3,783,666	-				+0.4
3,783,671	+				-0.5
3,783,671	+				+1.3
3,783,671	+				+0.1
3,783,672	-				+1.3
3,783,696	+				-0.6
3,783,696	+				-1.1
3,783,718	+				+0.7
3,783,718	+				+0.3
3,783,718	+				+0.1
3,783,771	+				+0.2
3,783,835	+				-0.4
3,783,835	+				+1.3
3,783,866	+				+2.8
3,783,867	-				+0.5
3,783,952	+		RR42_RS37085	0.11	-0.0
3,783,989	-		RR42_RS37085	0.12	-0.2
3,783,989	-		RR42_RS37085	0.12	-1.3
3,784,163	+		RR42_RS37085	0.19	+2.6
3,784,163	+		RR42_RS37085	0.19	+0.7
3,784,164	-		RR42_RS37085	0.19	+2.1
3,784,164	-		RR42_RS37085	0.19	+1.0
3,784,164	-		RR42_RS37085	0.19	-0.3
3,784,164	-		RR42_RS37085	0.19	+0.9
3,784,164	-		RR42_RS37085	0.19	+3.0
3,784,370	+		RR42_RS37085	0.27	+1.6
3,784,379	+		RR42_RS37085	0.28	+1.5
3,784,380	-		RR42_RS37085	0.28	-0.4
3,784,380	-		RR42_RS37085	0.28	-1.3
3,784,654	+		RR42_RS37085	0.39	+0.4
3,784,655	-		RR42_RS37085	0.39	+2.7
3,784,830	-		RR42_RS37085	0.46	-0.3
3,784,864	+		RR42_RS37085	0.47	-0.9
3,784,864	+		RR42_RS37085	0.47	+1.6
3,784,864	+		RR42_RS37085	0.47	-2.6
3,784,865	-		RR42_RS37085	0.47	-1.0
3,784,865	-		RR42_RS37085	0.47	+0.7
3,784,865	-		RR42_RS37085	0.47	-0.3
3,784,893	-		RR42_RS37085	0.48	+0.8
3,784,976	+		RR42_RS37085	0.52	+0.0
3,784,977	-		RR42_RS37085	0.52	-1.9
3,784,977	-		RR42_RS37085	0.52	-0.3
3,784,977	-		RR42_RS37085	0.52	-0.2
3,784,977	-		RR42_RS37085	0.52	+0.6
3,785,012	-		RR42_RS37085	0.53	-0.1
3,785,381	+		RR42_RS37085	0.68	+1.9
3,785,381	+		RR42_RS37085	0.68	-2.0
3,785,381	+		RR42_RS37085	0.68	+0.5
3,785,382	-		RR42_RS37085	0.68	+3.2
3,785,382	-		RR42_RS37085	0.68	-0.2
3,785,389	+		RR42_RS37085	0.68	+0.0
3,785,392	+		RR42_RS37085	0.68	-0.6
3,785,393	-		RR42_RS37085	0.68	-0.8
3,785,393	-		RR42_RS37085	0.68	-1.8
3,785,417	+				+1.2
3,785,418	-		RR42_RS37085	0.69	+1.2
3,785,418	-		RR42_RS37085	0.69	-1.3
3,785,591	+		RR42_RS37085	0.76	+0.5
3,785,625	+		RR42_RS37085	0.78	+0.9
3,785,710	+		RR42_RS37085	0.81	+1.4
3,785,710	+		RR42_RS37085	0.81	+0.8
3,785,711	-		RR42_RS37085	0.81	+0.3
3,785,711	-		RR42_RS37085	0.81	-2.4
3,785,744	+		RR42_RS37085	0.82	+1.2
3,785,833	+		RR42_RS37085	0.86	-1.9
3,785,834	-		RR42_RS37085	0.86	-0.1
3,785,834	-		RR42_RS37085	0.86	-0.6
3,785,867	+		RR42_RS37085	0.87	-1.4
3,785,868	-		RR42_RS37085	0.87	-3.0
3,785,868	-		RR42_RS37085	0.87	-2.2
3,785,950	+				+0.2
3,786,048	+				-2.3
3,786,048	+				+0.5
3,786,048	+				-0.2
3,786,048	+				-0.5
3,786,048	+				+1.8
3,786,048	+				+0.1
3,786,049	-				+0.4
3,786,049	-				+1.6
3,786,049	-				+0.4
3,786,049	-				+0.7
3,786,049	-				+1.9
3,786,102	+				-0.7
3,786,102	+				-0.6
3,786,102	+				-1.9
3,786,102	+				+0.0
3,786,102	+				+0.3
3,786,102	+				-2.1
3,786,103	-				-0.5
3,786,134	-				-2.4
3,786,134	-				-0.8
3,786,134	-				-1.7
3,786,168	+				+1.2
3,786,168	+				+1.9
3,786,169	-				+0.6
3,786,169	-				+1.1
3,786,243	+				-3.2
3,786,244	-				-0.1
3,786,244	-				+0.1
3,786,244	-				+1.1
3,786,246	+				-0.8
3,786,246	+				+0.2
3,786,246	+				+0.7
3,786,246	+				-0.2
3,786,247	-				+0.2
3,786,247	-				-1.6
3,786,311	+				-1.9
3,786,311	+				+1.6
3,786,312	-				+1.2
3,786,312	-				-0.0
3,786,312	-				-2.5
3,786,312	-				-0.8
3,786,314	-				-2.9
3,786,353	-		RR42_RS37090	0.12	-0.4
3,786,353	-		RR42_RS37090	0.12	-2.5
3,786,388	+		RR42_RS37090	0.15	-0.5
3,786,443	-		RR42_RS37090	0.21	-0.4
3,786,443	-		RR42_RS37090	0.21	-0.4
3,786,463	+		RR42_RS37090	0.24	-2.6
3,786,565	+		RR42_RS37090	0.35	-0.1
3,786,565	+		RR42_RS37090	0.35	+1.0
3,786,565	+		RR42_RS37090	0.35	+0.9
3,786,566	-		RR42_RS37090	0.35	+0.8
3,786,580	+		RR42_RS37090	0.36	+0.7
3,786,616	+		RR42_RS37090	0.40	+0.2
3,786,617	-		RR42_RS37090	0.40	-1.8
3,786,693	+		RR42_RS37090	0.49	+2.3
3,786,693	+		RR42_RS37090	0.49	+1.8
3,786,694	-		RR42_RS37090	0.49	-2.7
3,786,813	-		RR42_RS37090	0.62	-0.2
3,786,852	+		RR42_RS37090	0.66	+0.9
3,786,852	+		RR42_RS37090	0.66	-0.6
3,786,853	-		RR42_RS37090	0.66	+0.5
3,786,853	-		RR42_RS37090	0.66	-0.1
3,786,857	-		RR42_RS37090	0.67	+2.2
3,786,857	-		RR42_RS37090	0.67	+1.1
3,786,857	-		RR42_RS37090	0.67	-0.7
3,786,978	+		RR42_RS37090	0.80	+0.2
3,786,979	-		RR42_RS37090	0.80	+0.0
3,786,979	-		RR42_RS37090	0.80	+1.4
3,786,979	-		RR42_RS37090	0.80	-0.9
3,786,987	+		RR42_RS37090	0.81	-1.1
3,786,987	+		RR42_RS37090	0.81	+0.6
3,786,987	+		RR42_RS37090	0.81	-0.8