Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36635

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,672,220	-				-0.4
3,672,345	-		RR42_RS36630	0.23	+0.2
3,672,363	-		RR42_RS36630	0.25	+0.1
3,672,548	+		RR42_RS36630	0.44	+1.2
3,672,549	-		RR42_RS36630	0.44	+0.5
3,672,729	-		RR42_RS36630	0.63	+0.1
3,672,749	+		RR42_RS36630	0.65	-1.0
3,672,749	+		RR42_RS36630	0.65	-0.3
3,672,830	+		RR42_RS36630	0.73	-1.8
3,672,941	+		RR42_RS36630	0.85	+0.8
3,672,951	-		RR42_RS36630	0.86	-0.4
3,672,989	+		RR42_RS36630	0.90	+1.9
3,673,327	+				-0.2
3,673,351	+				+0.1
3,673,352	-				-0.1
3,673,401	-		RR42_RS36635	0.12	+1.2
3,673,553	+		RR42_RS36635	0.22	+0.1
3,673,759	+		RR42_RS36635	0.35	+3.2
3,673,759	+		RR42_RS36635	0.35	-1.7
3,673,819	+		RR42_RS36635	0.39	-0.2
3,673,912	+		RR42_RS36635	0.45	-0.7
3,673,913	-		RR42_RS36635	0.45	-2.4
3,673,913	-		RR42_RS36635	0.45	-0.9
3,673,913	-		RR42_RS36635	0.45	+0.9
3,673,913	-		RR42_RS36635	0.45	+0.6
3,673,913	-		RR42_RS36635	0.45	-0.5
3,674,096	-		RR42_RS36635	0.57	+1.0
3,674,269	+		RR42_RS36635	0.68	+1.0
3,674,270	-		RR42_RS36635	0.68	-1.0
3,674,270	-		RR42_RS36635	0.68	-0.9
3,674,270	-		RR42_RS36635	0.68	-1.6
3,674,660	+				-0.7
3,674,660	+				-2.2
3,674,661	-				-0.7
3,674,661	-				+1.1
3,674,661	-				-0.6
3,674,775	+				-0.8
3,674,776	-				+0.3
3,674,813	+				-2.1
3,674,813	+				-0.8
3,674,893	-				+0.4
3,674,905	+				-0.4
3,674,907	+				+0.2
3,674,907	+				-1.2
3,674,908	-				-0.5
3,674,908	-				-0.5
3,674,908	-				+0.0
3,674,908	-				+0.4
3,675,181	-		RR42_RS36640	0.35	-1.1
3,675,264	+		RR42_RS36640	0.43	-2.2
3,675,265	-		RR42_RS36640	0.43	+0.9
3,675,351	+		RR42_RS36640	0.52	-0.8
3,675,352	-		RR42_RS36640	0.52	+1.3
3,675,447	+		RR42_RS36640	0.62	+0.1
3,675,448	-		RR42_RS36640	0.62	-0.0
3,675,553	+		RR42_RS36640	0.73	+0.8
3,675,554	-		RR42_RS36640	0.73	+1.8
3,675,554	-		RR42_RS36640	0.73	-0.3
3,675,554	-		RR42_RS36640	0.73	+1.2
3,675,554	-		RR42_RS36640	0.73	-2.4
3,675,554	-		RR42_RS36640	0.73	+0.6
3,675,555	+		RR42_RS36640	0.73	+0.6