Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35945

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,512,391	+		RR42_RS35940	0.44	-0.7
3,512,392	-		RR42_RS35940	0.45	+0.2
3,512,478	+		RR42_RS35940	0.54	+0.2
3,512,478	+		RR42_RS35940	0.54	+0.2
3,512,479	-		RR42_RS35940	0.54	-1.8
3,512,479	-		RR42_RS35940	0.54	+0.4
3,512,479	-		RR42_RS35940	0.54	+1.3
3,512,479	-		RR42_RS35940	0.54	-2.4
3,512,613	+		RR42_RS35940	0.68	+0.9
3,512,614	-		RR42_RS35940	0.68	-1.0
3,512,677	+		RR42_RS35940	0.75	-1.6
3,512,677	+		RR42_RS35940	0.75	+0.7
3,512,677	+		RR42_RS35940	0.75	-0.4
3,512,677	+		RR42_RS35940	0.75	+0.9
3,512,677	+		RR42_RS35940	0.75	+0.3
3,512,677	+		RR42_RS35940	0.75	+1.1
3,512,677	+		RR42_RS35940	0.75	-1.5
3,512,678	-		RR42_RS35940	0.75	+0.2
3,512,678	-		RR42_RS35940	0.75	-1.7
3,512,678	-		RR42_RS35940	0.75	+1.9
3,512,680	-		RR42_RS35940	0.75	+1.7
3,512,760	-		RR42_RS35940	0.83	-1.1
3,512,848	+				-0.5
3,512,908	+				-3.2
3,512,909	-				-0.4
3,512,982	-				+1.0
3,513,054	+				+2.6
3,513,054	+				+0.6
3,513,054	+				-0.1
3,513,054	+				+0.9
3,513,055	-				+0.2
3,513,056	+				-1.8
3,513,056	+				+0.3
3,513,056	+				+1.2
3,513,056	+				+0.7
3,513,057	-				-2.2
3,513,057	-				-0.8
3,513,057	-				+0.4
3,513,110	+				-0.7
3,513,111	-				+0.2
3,513,111	-				-0.9
3,513,111	-				+0.0
3,513,199	-				-0.6
3,513,306	+				-0.5
3,513,306	+				+0.6
3,513,307	-				+0.2
3,513,307	-				-3.8
3,513,307	-				-0.9
3,513,410	+				+0.3
3,513,411	-				-2.8
3,513,417	+				+0.3
3,513,479	+		RR42_RS35945	0.15	+1.2
3,513,480	-		RR42_RS35945	0.15	+0.2
3,513,581	+		RR42_RS35945	0.27	-2.5
3,513,584	+		RR42_RS35945	0.27	+0.4
3,513,584	+		RR42_RS35945	0.27	-1.5
3,513,584	+		RR42_RS35945	0.27	+0.8
3,513,584	+		RR42_RS35945	0.27	-0.3
3,513,584	+		RR42_RS35945	0.27	-0.4
3,513,584	+		RR42_RS35945	0.27	+1.2
3,513,584	+		RR42_RS35945	0.27	-2.2
3,513,585	-		RR42_RS35945	0.27	-0.6
3,513,585	-		RR42_RS35945	0.27	-0.2
3,513,587	+		RR42_RS35945	0.27	+0.2
3,513,588	-		RR42_RS35945	0.28	+0.8
3,513,602	+		RR42_RS35945	0.29	-1.8
3,513,602	+		RR42_RS35945	0.29	-1.2
3,513,602	+		RR42_RS35945	0.29	-0.8
3,513,602	-		RR42_RS35945	0.29	-1.7
3,513,603	-		RR42_RS35945	0.29	+0.1
3,513,603	-		RR42_RS35945	0.29	+0.3
3,513,603	-		RR42_RS35945	0.29	-0.0
3,513,671	+		RR42_RS35945	0.37	-0.4
3,514,046	+		RR42_RS35945	0.79	-1.6
3,514,046	+		RR42_RS35945	0.79	-0.3
3,514,046	+		RR42_RS35945	0.79	-1.1
3,514,047	-		RR42_RS35945	0.79	-0.2
3,514,047	-		RR42_RS35945	0.79	-0.6
3,514,132	-		RR42_RS35945	0.89	+1.6
3,514,139	+		RR42_RS35945	0.90	+0.6
3,514,140	-				-2.2
3,514,161	+				+0.7
3,514,161	+				+0.2
3,514,162	-				+3.2
3,514,224	+				-0.1
3,514,224	+				-1.4
3,514,224	+				+0.2
3,514,224	+				-0.4
3,514,224	+				-0.2
3,514,225	-				+0.4
3,514,225	-				+1.3
3,514,438	+		RR42_RS35950	0.40	+1.0
3,514,456	+		RR42_RS35950	0.46	-1.7
3,514,456	+		RR42_RS35950	0.46	-0.3
3,514,469	-		RR42_RS35950	0.50	+0.2
3,514,528	+		RR42_RS35950	0.68	-0.4
3,514,529	-		RR42_RS35950	0.68	-1.3
3,514,529	-		RR42_RS35950	0.68	-0.5
3,514,529	-		RR42_RS35950	0.68	-0.8
3,514,607	-				-0.8
3,514,774	+				-2.2
3,514,774	+				+0.8
3,514,775	-				+0.5
3,514,775	-				+0.8
3,514,927	+		RR42_RS35955	0.19	-0.0
3,515,149	-		RR42_RS35955	0.35	-2.0