Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35830

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,484,201	+		RR42_RS35820	0.69	-2.4
3,484,202	-		RR42_RS35820	0.70	+0.5
3,484,349	+				+1.3
3,484,441	+		RR42_RS35825	0.19	+0.9
3,484,442	-		RR42_RS35825	0.19	+0.7
3,484,442	-		RR42_RS35825	0.19	-0.4
3,484,442	-		RR42_RS35825	0.19	-0.1
3,484,442	-		RR42_RS35825	0.19	+0.1
3,484,442	-		RR42_RS35825	0.19	+0.4
3,484,508	+		RR42_RS35825	0.40	+0.7
3,484,508	+		RR42_RS35825	0.40	+0.7
3,484,508	+		RR42_RS35825	0.40	-0.4
3,484,650	+		RR42_RS35825	0.84	-0.5
3,484,651	-		RR42_RS35825	0.85	+0.5
3,484,815	+				+1.0
3,484,860	+				+1.0
3,484,869	+				+0.9
3,484,869	+				+3.2
3,484,888	+				-0.3
3,484,888	+				+0.9
3,484,888	+				-0.4
3,484,888	+				-0.7
3,484,889	-				+0.5
3,484,889	-				-1.3
3,484,889	-				-0.9
3,484,889	-				+0.2
3,484,889	-				-1.8
3,484,890	+				+0.7
3,484,956	+				+2.1
3,484,956	+				+0.8
3,484,956	+				-0.4
3,484,957	-				-0.2
3,484,977	-				-0.8
3,484,977	-				-0.1
3,485,023	+				-0.3
3,485,024	-				-0.0
3,485,024	-				-3.3
3,485,027	+				-1.5
3,485,027	+				-1.8
3,485,028	-				+0.2
3,485,028	-				+0.4
3,485,045	-				-0.8
3,485,045	-				+1.5
3,485,050	-				+0.5
3,485,058	-				-1.0
3,485,058	-				+0.3
3,485,079	+				+1.0
3,485,079	+				+0.2
3,485,079	+				-0.2
3,485,079	+				-1.5
3,485,079	+				+1.6
3,485,080	-				-0.8
3,485,080	-				+0.0
3,485,082	+				+0.5
3,485,083	-				-0.8
3,485,083	-				+0.6
3,485,096	+				+0.3
3,485,097	-				-0.9
3,485,117	-				+1.2
3,485,121	+				+0.2
3,485,121	+				-2.3
3,485,121	+				-1.2
3,485,121	+				-2.5
3,485,121	+				+1.0
3,485,121	+				-0.2
3,485,121	+				+0.2
3,485,122	-				+2.4
3,485,122	-				-2.2
3,485,122	-				-0.4
3,485,332	+		RR42_RS35830	0.30	-0.4
3,485,332	+		RR42_RS35830	0.30	+0.3
3,485,332	+		RR42_RS35830	0.30	+1.7
3,485,332	+		RR42_RS35830	0.30	+0.6
3,485,332	+		RR42_RS35830	0.30	+1.4
3,485,332	+		RR42_RS35830	0.30	-0.7
3,485,332	+		RR42_RS35830	0.30	-0.7
3,485,332	+		RR42_RS35830	0.30	+1.6
3,485,332	+		RR42_RS35830	0.30	-2.0
3,485,332	+		RR42_RS35830	0.30	-0.7
3,485,332	+		RR42_RS35830	0.30	-0.4
3,485,333	-		RR42_RS35830	0.30	-2.5
3,485,333	-		RR42_RS35830	0.30	-1.8
3,485,333	-		RR42_RS35830	0.30	-0.9
3,485,333	-		RR42_RS35830	0.30	-2.4
3,485,333	-		RR42_RS35830	0.30	-0.0
3,485,333	-		RR42_RS35830	0.30	-0.1
3,485,333	-		RR42_RS35830	0.30	-1.8
3,485,333	-		RR42_RS35830	0.30	+0.3
3,485,333	-		RR42_RS35830	0.30	-0.8
3,485,336	+		RR42_RS35830	0.30	+0.0
3,485,336	+		RR42_RS35830	0.30	-1.4
3,485,337	-		RR42_RS35830	0.30	-0.6
3,485,337	-		RR42_RS35830	0.30	-0.3
3,485,337	-		RR42_RS35830	0.30	-1.5
3,485,337	-		RR42_RS35830	0.30	-2.4
3,485,344	+		RR42_RS35830	0.31	+0.1
3,485,344	+		RR42_RS35830	0.31	-0.8
3,485,345	-		RR42_RS35830	0.31	-0.1
3,485,408	+		RR42_RS35830	0.40	-0.2
3,485,457	-		RR42_RS35830	0.47	-1.1
3,485,463	+		RR42_RS35830	0.48	+0.2
3,485,567	-		RR42_RS35830	0.62	+0.2
3,485,641	+		RR42_RS35830	0.72	-2.0
3,485,840	+				+1.1
3,485,840	+				-0.6
3,485,840	+				+0.1
3,485,864	-				-3.3
3,485,888	+				-0.1
3,485,888	+				-1.2
3,485,888	+				-1.5
3,485,889	-				+0.2
3,485,889	-				+0.9
3,486,577	+		RR42_RS35835	0.37	+1.9
3,486,613	+		RR42_RS35835	0.39	+0.6
3,486,614	-		RR42_RS35835	0.39	+1.2
3,486,614	-		RR42_RS35835	0.39	+0.4
3,486,614	-		RR42_RS35835	0.39	-0.9
3,486,614	-		RR42_RS35835	0.39	+0.1
3,486,614	-		RR42_RS35835	0.39	-0.0