Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34375

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,135,377	+				+0.7
3,135,523	-				+0.1
3,135,527	+				+1.0
3,135,528	-				+0.7
3,135,528	-				-0.3
3,135,528	-				-2.5
3,135,533	+				+0.8
3,135,533	+				-0.4
3,135,534	-				+0.6
3,135,534	-				-1.6
3,135,598	-				-0.3
3,135,677	-		RR42_RS34370	0.18	-2.6
3,135,677	-		RR42_RS34370	0.18	-2.4
3,135,677	-		RR42_RS34370	0.18	-1.6
3,135,684	-		RR42_RS34370	0.19	+0.5
3,135,715	+		RR42_RS34370	0.25	+0.4
3,135,716	-		RR42_RS34370	0.25	-1.2
3,135,947	-		RR42_RS34370	0.68	+1.2
3,135,961	+		RR42_RS34370	0.71	+0.4
3,135,962	-		RR42_RS34370	0.71	+0.7
3,135,976	+		RR42_RS34370	0.73	+0.3
3,135,976	+		RR42_RS34370	0.73	-0.0
3,135,976	+		RR42_RS34370	0.73	+1.8
3,135,977	-		RR42_RS34370	0.74	-0.9
3,136,040	+		RR42_RS34370	0.85	-0.4
3,136,058	-		RR42_RS34370	0.89	+0.4
3,136,175	+				+0.5
3,136,175	+				+0.7
3,136,175	+				-1.6
3,136,175	+				-1.0
3,136,176	-				-2.6
3,136,193	+				-3.2
3,136,303	-		RR42_RS34375	0.45	-2.9
3,136,304	+		RR42_RS34375	0.46	+0.1
3,136,304	+		RR42_RS34375	0.46	-0.3
3,136,304	+		RR42_RS34375	0.46	-0.0
3,136,305	-		RR42_RS34375	0.46	+0.5
3,136,305	-		RR42_RS34375	0.46	+0.9
3,136,305	-		RR42_RS34375	0.46	+0.2
3,136,305	-		RR42_RS34375	0.46	+0.6
3,136,305	-		RR42_RS34375	0.46	+0.3
3,136,305	-		RR42_RS34375	0.46	+0.1
3,136,305	-		RR42_RS34375	0.46	-1.5
3,136,305	-		RR42_RS34375	0.46	-1.2
3,136,305	-		RR42_RS34375	0.46	-0.1
3,136,305	-		RR42_RS34375	0.46	-1.8
3,136,305	-		RR42_RS34375	0.46	+0.6
3,136,728	+				+0.5
3,136,728	+				+0.4
3,136,767	+				+0.8
3,136,767	+				+0.2
3,136,768	-				-0.0
3,136,849	+				+1.2
3,137,040	+				-2.6
3,137,040	+				-3.3
3,137,040	+				-2.0
3,137,083	-				+2.5
3,137,083	-				-2.1
3,137,169	+		RR42_RS34380	0.14	+1.4
3,137,169	+		RR42_RS34380	0.14	-0.3
3,137,169	+		RR42_RS34380	0.14	+0.1
3,137,169	+		RR42_RS34380	0.14	+0.0
3,137,169	+		RR42_RS34380	0.14	-3.4
3,137,170	-		RR42_RS34380	0.14	+1.7